Knight Cancer Institute

2023

140° Field of View Contact Handheld Swept-source OCT for Pediatric Peripheral Imaging

Ni, S., Nguyen, T. T. P., Ng, R., Ostmo, S., Jia, Y., Chiang, M. F., Huang, D., Skalet, A. H., Campbell, J. P. & Jian, Y., 2023, Ophthalmic Technologies XXXIII. Hammer, D. X., Bizheva, K. & Schuele, G. (eds.). SPIE, 123600G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12360).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Automated Anatomical Feature Detection for Completeness of Abdominal FAST Exam

Lee, H. W., Zahiri, M., Ghoshal, G., Schmidt, S., Schnittke, N., Hicks, B., Kaili, M., Gregory, C., Feuerherdt, M., Thomas, C., Zhang, Y., Hibbs, K., Sreenivasan, A., Shupp, J. W., Rizzo, J., Gregory, K. & Raju, B., 2023, IUS 2023 - IEEE International Ultrasonics Symposium, Proceedings. IEEE Computer Society, (IEEE International Ultrasonics Symposium, IUS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

First demonstration of a novel nerve-targeting fluorophore in a cohort of ex vivo human tissues

Hebert, K. A., Bateman, L., Parker, D., Nunziata, J., Paydarfar, J. A., Hong, J., Kerr, D. A., Zanazzi, G. J., Barth, C. W., Wang, L., Gibbs, S. L. & Henderson, E. R., 2023, Molecular-Guided Surgery: Molecules, Devices, and Applications IX. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 123610D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12361).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

Proceduralist Criteria for Evaluating Interface Utility of Novel Imaging Modalities in Early Phase Clinical Trials - Evaluating the Need for Standardized Criteria

Henderson, E. R., Elliott, J., Jiang, S., Gitajn, I. L., Lee, J., Gibbs, S., Bouvet, M., Mahadevan-Jansen, A., Daly, M., Streeter, S. S., Paulsen, K. D., Pogue, B. W., Samkoe, K. S. & Singhal, S., 2023, Molecular-Guided Surgery: Molecules, Devices, and Applications IX. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 123610F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12361).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

Use of Freshly Amputated Human Limbs for Pre-Clinical Evaluation of Molecular-Targeted Fluorescent Probes

Bateman, L. M., Hebert, K. A., Streeter, S. S., Nunziata, J. A., Barth, C. W., Wang, L. G., Gibbs, S. L. & Henderson, E. R., 2023, Molecular-Guided Surgery: Molecules, Devices, and Applications IX. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 1236109. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12361).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

Weakly Semi-supervised Detection in Lung Ultrasound Videos

Ouyang, J., Chen, L., Li, G. Y., Balaraju, N., Patil, S., Mehanian, C., Kulhare, S., Millin, R., Gregory, K. W., Gregory, C. R., Zhu, M., Kessler, D. O., Malia, L., Dessie, A., Rabiner, J., Coneybeare, D., Shopsin, B., Hersh, A., Madar, C., Shupp, J., & 7 othersJohnson, L. S., Avila, J., Dwyer, K., Weimersheimer, P., Raju, B., Kruecker, J. & Chen, A., 2023, Information Processing in Medical Imaging - 28th International Conference, IPMI 2023, Proceedings. Frangi, A., de Bruijne, M., Wassermann, D. & Navab, N. (eds.). Springer Science and Business Media Deutschland GmbH, p. 195-207 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13939 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

2 Scopus citations

Weakly Semi-supervised Detector-based Video Classification with Temporal Context for Lung Ultrasound

Li, G. Y., Chen, L., Zahiri, M., Balaraju, N., Patil, S., Mehanian, C., Gregory, C., Gregory, K., Raju, B., Kruecker, J. & Chen, A., 2023, Proceedings - 2023 IEEE/CVF International Conference on Computer Vision Workshops, ICCVW 2023. Institute of Electrical and Electronics Engineers Inc., p. 2475-2484 10 p. (Proceedings - 2023 IEEE/CVF International Conference on Computer Vision Workshops, ICCVW 2023).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2022

An investigation into the in vivo performance of Changsha and rhodamine fluorophores

Montaño, A. R., Wang, L. G., Masillati, A., Shams, N. A. & Gibbs, S. L., 2022, Molecular-Guided Surgery: Molecules, Devices, and Applications VIII. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 119430A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11943).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Arbitrary-Length Analogs to de Bruijn Sequences

Nellore, A. & Ward, R., Jun 1 2022, 33rd Annual Symposium on Combinatorial Pattern Matching, CPM 2022. Bannai, H. & Holub, J. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 9. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 223).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Fine-tuning physicochemical properties of Oxazine-4 for nerve-specific imaging

Greer, W. S., Montaño, A., Shams, N. A., Szafran-Reeder, D., Masillati, A., Wang, L. G. & Gibbs, S. L., 2022, Molecular-Guided Surgery: Molecules, Devices, and Applications VIII. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 1194308. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11943).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Image-based mapping of cells onto a cell cycle continuum for integration of single cell sequencing and live cell imaging

Schultz, A., Alahmari, S., Johnson, J., Veith, T., Siddiqui, Z., El Naqa, I., Heiser, L. & Andor, N., 2022, Proceedings - IEEE 8th International Conference on Big Data Computing Service and Applications, BigDataService 2022. Institute of Electrical and Electronics Engineers Inc., p. 119-123 5 p. (Proceedings - IEEE 8th International Conference on Big Data Computing Service and Applications, BigDataService 2022).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Nonlinear unmixing to account for blood absorption in multispectral imaging for improved quantification of intracellular and extracellular EGFR

Torres, V. C., Wang, L., Hodge, S., Solanki, A., McMahon, N. P., Gibbs, S. L., Tichauer, K. M. & Samkoe, K. S., 2022, Visualizing and Quantifying Drug Distribution in Tissue VI. Chan, K. F. & Evans, C. L. (eds.). SPIE, 1193805. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11938).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Panoramic Retinal Optical Coherence Tomography

Jian, Y., Ni, S., Nguyen, T. T. P., Skalet, A. & Campbell, P. J., 2022, 2022 IEEE Photonics Conference, IPC 2022 - Proceedings. Institute of Electrical and Electronics Engineers Inc., (2022 IEEE Photonics Conference, IPC 2022 - Proceedings).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

The advantages and disadvantages of novel contrast agent types for fluorescence guided surgery

Barth, C. W. & Gibbs, S. L., 2022, Molecular-Guided Surgery: Molecules, Devices, and Applications VIII. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 1194309. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11943).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2021

A method for validating depth-resolved biodistributions in topically-stained specimen with multi-channel fluorescence cryo-imaging.

Byrd, B. K., Strawbridge, R. S., Wells, W., Barth, C., Gibbs, S. & Davis, S. C., 2021, Molecular-Guided Surgery: Molecules, Devices, and Applications VII. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 116250X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11625).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

An invertible transform for efficient string matching in Labeled Digraphs

Nellore, A., Nguyen, A. & Thompson, R. F., Jul 1 2021, 32nd Annual Symposium on Combinatorial Pattern Matching, CPM 2021. Gawrychowski, P. & Starikovskaya, T. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 20. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 191).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

4 Scopus citations

2020

A 3D actuator for laser scanning endoscopy

Gurcuoglu, O., Derman, I. D., Altlnsoy, M., Khayatzadeh, R., Erten, A. C., Civitci, F. & Ferhanoglu, O., 2020, MOEMS and Miniaturized Systems XIX. Piyawattanametha, W., Piyawattanametha, W., Park, Y-H. & Zappe, H. (eds.). SPIE, 112930R. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 11293).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Activation vs. Organization: Prognostic Implications of T and B Cell Features of the PDAC Microenvironment

Gray, E., Liudahl, S., Sivagnanam, S., Betts, C., Link, J., Keith, D., Sheppard, B., Sears, R., Thibault, G., Gray, J. W., Coussens, L. M. & Chang, Y. H., 2020, Mathematical and Computational Oncology - Second International Symposium, ISMCO 2020, 2020, Proceedings. Bebis, G., Alekseyev, M., Cho, H., Gevertz, J. & Rodriguez Martinez, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 44-55 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12508 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

Fluorescence image-guided surgery: A perspective on contrast agent development

Barth, C. W. & Gibbs, S. L., 2020, Molecular-Guided Surgery: Molecules, Devices, and Applications VI. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 112220J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11222).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

67 Scopus citations

Intracellular paired agent imaging enables improved evaluation of tyrosine kinase inhibitor target engagement

Solanki, A., Wang, L., Korber, J., McMahon, N., Tichauer, K., Samkoe, K. S. & Gibbs, S. L., 2020, Visualizing and Quantifying Drug Distribution in Tissue IV. Chan, K. F. & Evans, C. L. (eds.). SPIE, 112190F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11219).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

4 Scopus citations

In vivo nerve-specificity of rhodamines and Si-rhodamines

Montano, A. R., Wang, L. G., Barth, C. W., Shams, N. A., Kumarapeli, K. A. S. U. & Gibbs, S. L., 2020, Molecular-Guided Surgery: Molecules, Devices, and Applications VI. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 112220I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11222).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

3 Scopus citations

Noninvasive in vivo mapping of intracellular signaling proteins using a pairing of targeted and untargeted fluorescently labeled small molecule kinase inhibitors

Tichauer, K. M., Wang, L., Solanki, A., Korber, J. R., Gibbs, S. L. & Samkoe, K. S., 2020, Visualizing and Quantifying Drug Distribution in Tissue IV. Chan, K. F. & Evans, C. L. (eds.). SPIE, 112190K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11219).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Probing the spatiotemporal dynamics of Ras-associated membrane nanodomains with high-throughput single particle tracking via photoactivated localization microscopy (spt-PALM)

Lee, Y., Tao, K., Phelps, C., Huang, T., Mostofian, B., Zuckerman, D. & Nan, X., 2020, High-Speed Biomedical Imaging and Spectroscopy V. Tsia, K. K. & Goda, K. (eds.). SPIE, 112500N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11250).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Single cell tracking based on Voronoi partition via stable matching

Chang, Y. H., Linsley, J., Lamstein, J., Kalra, J., Epstein, I., Barch, M., Daily, K., Synder, P., Omberg, L., Heiser, L. & Finkbeiner, S., Dec 14 2020, 2020 59th IEEE Conference on Decision and Control, CDC 2020. Institute of Electrical and Electronics Engineers Inc., p. 5086-5091 6 p. 9304436. (Proceedings of the IEEE Conference on Decision and Control; vol. 2020-December).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

1 Scopus citations

2019

cmIF: A Python Library for Scalable Multiplex Imaging Pipelines

Eng, J., Bucher, E., Gray, E., Campbell, L. G., Thibault, G., Heiser, L., Gibbs, S., Gray, J. W., Chin, K. & Chang, Y. H., 2019, Mathematical and Computational Oncology - 1st International Symposium, ISMCO 2019, Proceedings. Bebis, G., Benos, T., Chen, K., Jahn, K. & Lima, E. (eds.). Springer, p. 37-43 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11826 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

Compartment Syndrome Detection Using Vibration-Enabled Ultrasound Shear Wave Elastography - Simulation and Experimental Results

Nguyen, M. M., Shamdasani, V., Gades, A., Gregory, K. W., Erkamp, R., Xie, H., Zhu, M., Graham, T., Lazar, J., Jones, J. M., Gregory, C. R. & Kyne, S., Oct 2019, 2019 IEEE International Ultrasonics Symposium, IUS 2019. IEEE Computer Society, p. 1375-1378 4 p. 8926283. (IEEE International Ultrasonics Symposium, IUS; vol. 2019-October).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Diagnostic performance of receptor-specific surgical specimen staining correlate with receptor expression level

House, B. J., Schaefer, J. M., Barth, C. W., Davis, S. C. & Gibbs, S. L., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

1 Scopus citations

Effect of staining temperature on topical dual stain imaging of tissue specimens for tumor identification

Folaron, M. R., Strawbridge, R. R., Samkoe, K. S., Gibbs, S. L. & Davis, S. C., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620L. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

2 Scopus citations

Fluorescent nerve identification in resected human tissue specimens

Barth, C. W., Amling, C. L. & Gibbs, S. L., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2 Scopus citations

Investigation of oxazine and rhodamine derivatives as peripheral nerve tissue targeting contrast agent for in Vivo fluorescence imaging

Wang, L. G., Barth, C. W., Combs, J. R., Montaño, A. R. & Gibbs, S. L., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

7 Scopus citations

Speckle-Enhanced Prism Spectrometer

Cetindag, S. K., Ferhanoglu, O., Toy, M. F. & Civitci, F., Jul 2019, OMN 2019 - 2019 International Conference on Optical MEMS and Nanophotonics, Proceedings. IEEE Computer Society, p. 84-85 2 p. 8925014. (International Conference on Optical MEMS and Nanophotonics; vol. 2019-July).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

Thrombogenicity of poly(Vinyl) alcohol hydrogels is dependent on the crosslinking agent

Cristina Puy, N. M. B., McCarty, O. J. T. & Hinds, M. T., 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, p. 469 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Variational autoencoding tissue response to microenvironment perturbation

Schau, G. F., Thibault, G., Dane, M. A., Gray, J. W., Heiser, L. M. & Chang, Y. H., 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109491M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

1 Scopus citations

2018

Design and evaluation of a portable smart-phone based peripheral neuropathy test platform

Jacobs, P. G., Hanaway, P., Leitschuh, J., Condon, J., Rajhbeharrysingh, U., Mosquera-Lopez, C., Guidarelli, C. & Winters-Stone, K., Oct 26 2018, 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Institute of Electrical and Electronics Engineers Inc., p. 1-4 4 p. 8513100. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2018-July).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

4 Scopus citations

Federated Galaxy: Biomedical Computing at the Frontier

Afgan, E., Jalili, V., Goonasekera, N., Taylor, J. & Goecks, J., Sep 7 2018, Proceedings - 2018 IEEE International Conference on Cloud Computing, CLOUD 2018 - Part of the 2018 IEEE World Congress on Services. IEEE Computer Society, p. 871-874 4 p. 8457892. (IEEE International Conference on Cloud Computing, CLOUD; vol. 2018-July).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

7 Scopus citations

Ultrasound-based detection of lung abnormalities using single shot detection convolutional neural networks

Kulhare, S., Zheng, X., Mehanian, C., Gregory, C., Zhu, M., Gregory, K., Xie, H., McAndrew Jones, J. & Wilson, B., 2018, Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation - International Workshops, POCUS 2018, BIVPCS 2018, CuRIOUS 2018, and CPM 2018, Held in Conjunction with MICCAI 2018, Proceedings. Aylward, S., Simpson, A., Maier-Hein, L., Martel, A., Chabanas, M., Tavares, J. M., Reinertsen, I., Taylor, Z., Xiao, Y., Farahani, K., Stoyanov, D., Li, S. & Rivaz, H. (eds.). Springer-Verlag, p. 65-73 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11042 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

36 Scopus citations

2017

Breast cancer histopathology image analysis pipeline for tumor purity estimation

Azimi, V., Chang, Y. H., Thibault, G., Smith, J., Tsujikawa, T., Kukull, B., Jensen, B., Corless, C., Margolin, A. & Gray, J. W., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 1137-1140 4 p. 7950717. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

9 Scopus citations

Deep learning based Nucleus Classification in pancreas histological images

Chang, Y. H., Thibault, G., Madin, O., Azimi, V., Meyers, C., Johnson, B., Link, J., Margolin, A. & Gray, J. W., Sep 13 2017, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Smarter Technology for a Healthier World, EMBC 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 672-675 4 p. 8036914. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

42 Scopus citations

Integrative analysis on histopathological image for identifying cellular heterogeneity

Chang, Y. H., Thibault, G., Johnson, B., Margolin, A. & Gray, J. W., 2017, Medical Imaging 2017: Digital Pathology. Gurcan, M. N. & Tomaszewski, J. E. (eds.). SPIE, 101400T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10140).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

Precision medicine and FPGA technology: Challenges and opportunities

Hill, B., Smith, J., Srinivasa, G., Sonmez, K., Sirasao, A., Gupta, A. & Mukherjee, M., Sep 27 2017, 2017 IEEE 60th International Midwest Symposium on Circuits and Systems, MWSCAS 2017. Institute of Electrical and Electronics Engineers Inc., p. 655-658 4 p. 8053008. (Midwest Symposium on Circuits and Systems; vol. 2017-August).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

7 Scopus citations

Reliability of 3D-printed dynamic scanners

Gönültaś, B. M., Aygün, S., Khayatzadeh, R., Çivitci, F., Gökdel, Y. D., Yelten, M. B. & Ferhanoǧlu, O., Jul 28 2017, Proceedings of the 2017 IEEE 22nd International Mixed-Signals Test Workshop, IMSTW 2017. Institute of Electrical and Electronics Engineers Inc., 7995204. (Proceedings of the 2017 IEEE 22nd International Mixed-Signals Test Workshop, IMSTW 2017).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2016

Fiber temperature sensor utilizing a thermomechanical MEMS detector

Çirkinolu, H. O., Bilgin, H., Çivitci, F., Torun, H. & Ferhanoglu, O., 2016, Photonic Fiber and Crystal Devices: Advances in Materials and Innovations in Device Applications X. Guo, R. & Yin, S. (eds.). SPIE, 995813. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9958).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Quantitative analysis of histological tissue image based on cytological profiles and spatial statistics

Chang, Y. H., Thibault, G., Azimi, V., Johnson, B., Jorgens, D., Link, J., Margolin, A. & Gray, J. W., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 1175-1178 4 p. 7590914. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

8 Scopus citations

Targeting transcriptional and epigenetic reprogramming in stromal cells in fibrosis and cancer

Hah, N., Sherman, M. H., Yu, R. T., Downes, M. & Evans, R. M., 2016, 21st Century Genetics Genes at Work, 2015. Grodzicker, T., Stillman, B. & Stewart, D. (eds.). Cold Spring Harbor Laboratory Press, p. 249-255 7 p. (Cold Spring Harbor Symposia on Quantitative Biology; vol. 80).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

20 Scopus citations

Towards 3D printed confocal endoscopy

Savaş, J., Çalişkan, A., Çivitci, F., Gökdel, Y. D. & Ferhanoǧlu, O., 2016, Novel Optical Systems Design and Optimization XIX. Davis, A. J., Hahlweg, C. F. & Mulley, J. R. (eds.). SPIE, 99480D. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9948).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

Visualizing Oxazine 4 nerve-specific fluorescence ex vivo in frozen tissue sections

Barth, C. W. & Gibbs, S. L., 2016, Molecular-Guided Surgery: Molecules, Devices, and Applications II. Pogue, B. W. & Gioux, S. (eds.). SPIE, 96960R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9696).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Open Access

11 Scopus citations

2015

Dielectrophoretic (DEP) isolation and detection of cancer related cell Free DNA, RNA and exosome biomarkers from blood and plasma (Abstract # 600)

Heller, M. J., Marciniak, J., Ibsen, S., Skowronski, E. & Sonnenberg, A., 2015, NSTI: Biotech, Biomaterials and Biomedical - TechConnect Briefs 2015. Laudon, M. & Romanowicz, B. (eds.). Taylor and Francis Inc., p. 71-74 4 p. (NSTI: Advanced Materials - TechConnect Briefs 2015; vol. 3).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

DNA double-write photolithography: A synergy for top-down and bottom-up nanofabrication (abstract # 611)

Heller, M. J. & Song, Y., 2015, NSTI: Advanced Manufacturing, Electronics and Microsystems - TechConnect Briefs 2015. Romanowicz, B. & Laudon, M. (eds.). Taylor and Francis Inc., p. 101-104 4 p. (NSTI: Advanced Materials - TechConnect Briefs 2015; vol. 4).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2013

Quantifying the inference power of a drug screen for predictive analysis

Berlow, N., Haider, S., Pal, R. & Keller, C., 2013, 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. p. 49-52 4 p. 6735928. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

3 Scopus citations

2012

Analyzing pathway design from drug perturbation experiments

Berlow, N., Pal, R., Davis, L. & Keller, C., 2012, 2012 IEEE Statistical Signal Processing Workshop, SSP 2012. p. 552-555 4 p. 6319757. (2012 IEEE Statistical Signal Processing Workshop, SSP 2012).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

4 Scopus citations

Knight Cancer Institute

Research output

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