Research output per year
Research output per year
- 21 results
Search results
-
2021
A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes
Chan, L. E., Vasilevsky, N. A., Thessen, A., Matentzoglu, N., Duncan, W. D., Mungall, C. J. & Haendel, M. A., 2021, In: CEUR Workshop Proceedings. 3073, p. 48-55 8 p.Research output: Contribution to journal › Conference article › peer-review
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Reclassification of Infectious Disease in the Mondo Disease Ontology
Vasilevsky, N., Toro, S., Matentzoglu, N., Jiao, D., Haendel, M., Robinson, P. N. & Mungall, C., 2021, In: CEUR Workshop Proceedings. 3073, p. 104-109 6 p.Research output: Contribution to journal › Conference article › peer-review
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The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics
Moxon, S., Solbrig, H., Unni, D., Jiao, D., Bruskiewich, R., Balhoff, J., Vaidya, G., Duncan, W., Hegde, H., Miller, M., Brush, M., Harris, N., Haendel, M. & Mungall, C., 2021, In: CEUR Workshop Proceedings. 3073, p. 148-151 4 p.Research output: Contribution to journal › Conference article › peer-review
7 Scopus citations -
2020
Mondo disease ontology: Harmonizing disease concepts across the world
Vasilevsky, N., Essaid, S., Matentzoglu, N., Harris, N. L., Haendel, M., Robinson, P. & Mungall, C. J., 2020, In: CEUR Workshop Proceedings. 2807Research output: Contribution to journal › Conference article › peer-review
12 Scopus citations -
2018
Expanding the molecular glycophenotype ontology to include model organisms and acquired diseases
Gourdine, J. P., Vasilevsky, N., Winfree, L., Brush, M. & Haendel, M., 2018, In: CEUR Workshop Proceedings. 2285Research output: Contribution to journal › Conference article › peer-review
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2017
Aligning the human phenotype and mammalian phenotype ontology using dead simple ontology design patterns
Vasilevsky, N., Balhoff, J. P., Mungall, C. J., Osumi-Sutherland, D., Kohler, S., Bello, S., Smith, C., Robinson, P. & Haendel, M., 2017, In: CEUR Workshop Proceedings. 2137Research output: Contribution to journal › Conference article › peer-review
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2016
Building a molecular glyco-phenotype ontology to decipher undiagnosed diseases
Gourdine, J. P., Koeller, D. M., Brush, M. H., Haendel, M. A. & Metz, T. O., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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Enhancing SciENcv through semantic research profile integration with the VIVO-ISF ontology
White, M., Brush, M., Essaid, S., Champieux, R., Zell, A., Haendel, M., Grove, C., Tabish, S. M. & Eichmann, D., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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Enhancing the human phenotype ontology for use by the layperson
Vasilevsky, N. A., Engelstad, M. E., Foster, E. D., Haendel, M. A., Mungall, C. J., Robinson, P. & Köhler, S., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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Gold-standard ontology-based annotation of concepts in biomedical text in the CRAFT corpus: Updates and extensions
Bada, M., Hunter, L., Vasilevsky, N. & Haendel, M., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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SEPIO: A semantic model for the integration and analysis of scientific evidence
Brush, M. H., Shefchek, K. & Haendel, M., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
4 Scopus citations -
Supporting database annotations and beyond with the Evidence & Conclusion Ontology (ECO)
Chibucos, M. C., Nadendla, S., Munro, J. B., Mitraka, E., Olley, D., Vasilevsky, N. A., Brush, M. H. & Giglio, M., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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2015
ROBOT: A command-line tool for ontology development
Overton, J. A., Dietze, H., Essaid, S., Osumi-Sutherland, D. & Mungall, C. J., 2015, In: CEUR Workshop Proceedings. 1515Research output: Contribution to journal › Conference article › peer-review
7 Scopus citations -
2014
Post-traumatic stress disorder (PTSD) ontology and use case
Gamble, B. T., Brush, M., Zirkle, M., Finch, D., Reeves, R., Hickham, D., Luther, S. L., Rindflesch, T., Fodeh, S. J., Bates, J., Brandt, C. & Cheung, K. H., 2014, In: CEUR Workshop Proceedings. 1327, p. 56-59 4 p.Research output: Contribution to journal › Conference article › peer-review
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2013
Eaglei-i: Ontology-driven federated search and data entry tools for discovering biomedical research resources
Haendel, M., Torniai, C., Vasilevsky, N., Hoffmann, S. & Bourges-Waldegg, D., 2013, In: CEUR Workshop Proceedings. 1060, p. 130-131 2 p.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations -
Enabling semantic search in a biospecimen repository
Essaid, S., Torniai, C. & Haendel, M. A., 2013, In: CEUR Workshop Proceedings. 1060, p. 50-53 4 p.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations -
Finding common ground: Integrating the eagle-i and VIVO ontologies
Torniai, C., Essaid, S., Lowe, B., Corson-Rikert, J. & Haendel, M., 2013, In: CEUR Workshop Proceedings. 1060, p. 46-49 4 p.Research output: Contribution to journal › Conference article › peer-review
3 Scopus citations -
What's in a genotype? An ontological characterization for integration of genetic variation data
Brush, M. H., Mungall, C., Washington, N. & Haendel, M. A., 2013, In: CEUR Workshop Proceedings. 1060, p. 105-108 4 p.Research output: Contribution to journal › Conference article › peer-review
4 Scopus citations -
2011
An ontology for gastrointestinal endoscopy
Essaid, S., 2011, In: CEUR Workshop Proceedings. 833, p. 244-245 2 p.Research output: Contribution to journal › Conference article › peer-review
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Developing an application ontology for biomedical resource annotation and retrieval: Challenges and lessons learned
Torniai, C., Brush, M., Vasilevsky, N., Segerdell, E., Wilson, M., Johnson, T., Corday, K., Shaffer, C. & Haendel, M., 2011, In: CEUR Workshop Proceedings. 833, p. 101-108 8 p.Research output: Contribution to journal › Conference article › peer-review
8 Scopus citations -
Developing a reagent application ontology within the OBO foundry framework
Brush, M. H., Vasilevsky, N., Torniai, C., Johnson, T., Shaffer, C. & Haendel, M. A., 2011, In: CEUR Workshop Proceedings. 833, p. 234-236 3 p.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations