Research output per year
Research output per year
- 1 - 50 out of 205 results
Search results
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2023
Detection of Mild Cognitive Impairment from Language Markers with Crossmodal Augmentation
Liu, G., Xue, Z., Zhan, L., Dodge, H. H. & Zhou, J., 2023, In: Pacific Symposium on Biocomputing. 2023, p. 7-18 12 p.Research output: Contribution to journal › Conference article › peer-review
Open Access1 Scopus citations -
Ontology-based representation and analysis of conditional vaccine immune responses using Omics data
Huffman, A., Ong, E., Brunson, T., Sanati, N., Zheng, J., Masci, A. M., Wu, G. & He, Y., 2023, In: CEUR Workshop Proceedings. 3603, p. 1-12 12 p.Research output: Contribution to journal › Conference article › peer-review
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Single Cell Spatial Biology for Precision Cancer Medicine
Gentles, A. J., Nirmal, A. J., Heiser, L. M., Lundberg, E. & Newman, A. M., 2023, In: Pacific Symposium on Biocomputing. 2023, p. 549-553 5 p.Research output: Contribution to journal › Conference article › peer-review
Open Access -
2022
Detecting Out-of-Distribution via an Unsupervised Uncertainty Estimation for Prostate Cancer Diagnosis
ProstateAI Clinical Collaborators, 2022, In: Proceedings of Machine Learning Research. 172, p. 796-807 12 p.Research output: Contribution to journal › Conference article › peer-review
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Dual operation-mode multiple spectrometer-based OCT system
Miao, Y., Song, J., Hsu, D., Ng, R., Jian, Y. & Ju, M. J., 2022, In: Optics InfoBase Conference Papers. CS2E.4.Research output: Contribution to journal › Conference article › peer-review
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2021
A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes
Chan, L. E., Vasilevsky, N. A., Thessen, A., Matentzoglu, N., Duncan, W. D., Mungall, C. J. & Haendel, M. A., 2021, In: CEUR Workshop Proceedings. 3073, p. 48-55 8 p.Research output: Contribution to journal › Conference article › peer-review
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Deep Spectral Ranking
Yıldız, İ., Dy, J., Erdoğmuş, D., Ostmo, S., Campbell, J. P., Chiang, M. F. & Ioannidis, S., 2021, In: Proceedings of Machine Learning Research. 130, p. 361-369 9 p.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations -
Effective scanning protocol for optical coherence tomography and angiography using a 1.6 MHz Fourier Domain mode-locked laser source
Miao, Y., Hsu, D., Kwon, J., Athwal, A., Yu, Y., Jian, Y., Sarunic, M. V. & Ju, M. J., 2021, In: Optics InfoBase Conference Papers. DW4A.5.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations -
In situ therapeutic response imaging through quantification of drug distribution and proteomic response
McMahon, N. P., Solanki, A., Wang, L. G., Montaño, A. R., Jones, J. A., Samkoe, K. S., Tichauer, K. M. & Gibbs, S. L., 2021, In: Optics InfoBase Conference Papers. OTh1E.2.Research output: Contribution to journal › Conference article › peer-review
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Lead optimization of nerve-specific fluorophores for image-guided nerve sparing surgical procedures
Barth, C. W., Wang, L. G., Montano, A., Antaris, A. L., Klaassen, A., Sorger, J., Kerr, D. A., Henderson, E. R., Alani, A. W. G. & Gibbs, S. L., 2021, In: Optics InfoBase Conference Papers. OW3E.3.Research output: Contribution to journal › Conference article › peer-review
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Multispectral in ovo imaging of intracellular and extracellular EGFR using paired-agent principles
Torres, V. C., Wang, L., Hodge, S., Solanki, A., McMahon, N., Tichauer, K. M., Gibbs, S. L. & Samkoe, K. S., 2021, In: Optics InfoBase Conference Papers. OW3E.4.Research output: Contribution to journal › Conference article › peer-review
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Reclassification of Infectious Disease in the Mondo Disease Ontology
Vasilevsky, N., Toro, S., Matentzoglu, N., Jiao, D., Haendel, M., Robinson, P. N. & Mungall, C., 2021, In: CEUR Workshop Proceedings. 3073, p. 104-109 6 p.Research output: Contribution to journal › Conference article › peer-review
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Refining automatic speech recognition system for older adults
Chen, L. & Asgari, M., 2021, In: ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings. 2021-June, p. 7003-7007 5 p.Research output: Contribution to journal › Conference article › peer-review
Open Access4 Scopus citations -
Remote auditory testing: Test-retest and user impressions
Rink, K. D., Gallun, F. J. & Diedesch, A. C., Nov 29 2021, In: Proceedings of Meetings on Acoustics. 45, 1, 050004.Research output: Contribution to journal › Conference article › peer-review
Open Access -
The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics
Moxon, S., Solbrig, H., Unni, D., Jiao, D., Bruskiewich, R., Balhoff, J., Vaidya, G., Duncan, W., Hegde, H., Miller, M., Brush, M., Harris, N., Haendel, M. & Mungall, C., 2021, In: CEUR Workshop Proceedings. 3073, p. 148-151 4 p.Research output: Contribution to journal › Conference article › peer-review
7 Scopus citations -
2020
A query taxonomy describes performance of patient-level retrieval from electronic health record data
Chamberlin, S. R., Bedrick, S. D., Cohen, A. M., Wang, Y., Wen, A., Liu, S., Liu, H. & Hersh, W. R., 2020, In: CEUR Workshop Proceedings. 2551, p. 27-33 7 p.Research output: Contribution to journal › Conference article › peer-review
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Fast and Accurate Ranking Regression
Yıldız, İ., Dy, J., Erdoğmuş, D., Kalpathy-Cramer, J., Ostmo, S., Campbell, J. P., Chiang, M. F. & Ioannidis, S., 2020, In: Proceedings of Machine Learning Research. 108, p. 77-88 12 p.Research output: Contribution to journal › Conference article › peer-review
4 Scopus citations -
Flipping the lab: Using consumer electronics for high-quality data collection
Gallun, F. J., 2020, In: Proceedings of Meetings on Acoustics. 42, 1, 032002.Research output: Contribution to journal › Conference article › peer-review
Open Access3 Scopus citations -
Mondo disease ontology: Harmonizing disease concepts across the world
Vasilevsky, N., Essaid, S., Matentzoglu, N., Harris, N. L., Haendel, M., Robinson, P. & Mungall, C. J., 2020, In: CEUR Workshop Proceedings. 2807Research output: Contribution to journal › Conference article › peer-review
12 Scopus citations -
Normative psychoacoustic data using the portable automated rapid testing (PART) iPad application
Srinivasan, N. K., Pfaffe, A. & Gallun, F., 2020, In: Proceedings of Meetings on Acoustics. 42, 1, 050008.Research output: Contribution to journal › Conference article › peer-review
Open Access2 Scopus citations -
Remote testing for psychological and physiological acoustics: Initial report of the P&P task force on remote testing
Ellen Peng, Z., Buss, E., Shen, Y., Bharadwaj, H., Christopher Stecker, G., Beim, J. A., Bosen, A. K., Braza, M., Diedesch, A. C., Dorey, C. M., Dykstra, A. R., Freyman, R., Gallun, F. J., Goldsworthy, R. L., Gray, L., Hoover, E. C., Ihlefeld, A., Koelewijn, T., Kopun, J. G., Mesik, J., & 4 others, 2020, In: Proceedings of Meetings on Acoustics. 42, 1, 050009.Research output: Contribution to journal › Conference article › peer-review
Open Access5 Scopus citations -
2019
Improving ASR systems for children with autism and language impairment using domain-focused DNN transfer techniques
Gale, R., Chen, L., Dolata, J., Van Santen, J. & Asgari, M., 2019, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 2019-September, p. 11-15 5 p.Research output: Contribution to journal › Conference article › peer-review
Open Access22 Scopus citations -
Using a manifold vocoder for spectral voice and style conversion
Dinh, T., Kain, A. & Tjaden, K., 2019, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 2019-September, p. 1388-1392 5 p.Research output: Contribution to journal › Conference article › peer-review
4 Scopus citations -
Variational Inference from Ranked Samples with Features
Guo, Y., Dy, J., Erdoğmuş, D., Kalpathy-Cramer, J., Ostmo, S., Campbell, J. P., Chiang, M. F. & Ioannidis, S., 2019, In: Proceedings of Machine Learning Research. 101, p. 599-614 16 p.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations -
2018
Articulation-to-speech synthesis using articulatory flesh point sensors' orientation information
Cao, B., Kim, M., Wang, J. R., Van Santen, J., Mau, T. & Wang, J., 2018, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 2018-September, p. 3152-3156 5 p.Research output: Contribution to journal › Conference article › peer-review
19 Scopus citations -
Expanding the molecular glycophenotype ontology to include model organisms and acquired diseases
Gourdine, J. P., Vasilevsky, N., Winfree, L., Brush, M. & Haendel, M., 2018, In: CEUR Workshop Proceedings. 2285Research output: Contribution to journal › Conference article › peer-review
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UIC/OHSU CLEF 2018 Task 2 diagnostic test accuracy ranking using publication type cluster similarity measures
Cohen, A. & Smalheiser, N. R., 2018, In: CEUR Workshop Proceedings. 2125Research output: Contribution to journal › Conference article › peer-review
3 Scopus citations -
2017
A comparison of sentence-level speech intelligibility metrics
Kain, A., Del Giudice, M. & Tjaden, K., 2017, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 2017-August, p. 1148-1152 5 p.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations -
Aligning the human phenotype and mammalian phenotype ontology using dead simple ontology design patterns
Vasilevsky, N., Balhoff, J. P., Mungall, C. J., Osumi-Sutherland, D., Kohler, S., Bello, S., Smith, C., Robinson, P. & Haendel, M., 2017, In: CEUR Workshop Proceedings. 2137Research output: Contribution to journal › Conference article › peer-review
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A simple algorithm for ventilation detection in the capnography signal during cardiopulmonary resuscitation
Leturiondo, M., Ruiz, J., De Gauna, S. R., González-Otero, D. M., Bastida, J. M. & Daya, M., 2017, In: Computing in Cardiology. 44, p. 1-4 4 p.Research output: Contribution to journal › Conference article › peer-review
Open Access2 Scopus citations -
Closed-loop adaptive filtering for supressing chest compression oscillations in the capnogram during cardiopulmonary resuscitation
Leturiondo, M., Gutierrez, J. J., De Gauna, S. R., Plaza, S., Veintemillas, J. F. & Daya, M., 2017, In: Computing in Cardiology. 44, p. 1-4 4 p.Research output: Contribution to journal › Conference article › peer-review
Open Access -
Integrating articulatory information in deep learning-based text-To-speech synthesis
Cao, B., Kim, M., Van Santen, J., Mau, T. & Wang, J., 2017, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 2017-August, p. 254-258 5 p.Research output: Contribution to journal › Conference article › peer-review
12 Scopus citations -
Open-loop adaptive filtering for suppressing chest compression oscillations in the capnogram during cardiopulmonary resuscitation
Leturiondo, M., Ruiz, J., Gutiérrez, J. J., Leturiondo, L. A., Russell, J. K. & Daya, M., 2017, In: Computing in Cardiology. 44, p. 1-4 4 p.Research output: Contribution to journal › Conference article › peer-review
Open Access -
Siamese autoencoders for speech style extraction and switching applied to voice identification and conversion
Mohammadi, S. H. & Kain, A., 2017, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 2017-August, p. 1293-1297 5 p.Research output: Contribution to journal › Conference article › peer-review
4 Scopus citations -
Turn-Taking offsets and dialogue context
Heeman, P. A. & Lunsford, R., 2017, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 2017-August, p. 1671-1675 5 p.Research output: Contribution to journal › Conference article › peer-review
10 Scopus citations -
2016
A voice conversion mapping function based on a stacked joint-autoencoder
Mohammadi, S. H. & Kain, A., 2016, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 08-12-September-2016, p. 1647-1651 5 p.Research output: Contribution to journal › Conference article › peer-review
9 Scopus citations -
Building a molecular glyco-phenotype ontology to decipher undiagnosed diseases
Gourdine, J. P., Koeller, D. M., Brush, M. H., Haendel, M. A. & Metz, T. O., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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Collaborative workspaces for pathway curation
Durupinar-Babur, F., Siper, M. C., Dogrusoz, U., Bahceci, I., Babur, O. & Demir, E., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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Enhancing SciENcv through semantic research profile integration with the VIVO-ISF ontology
White, M., Brush, M., Essaid, S., Champieux, R., Zell, A., Haendel, M., Grove, C., Tabish, S. M. & Eichmann, D., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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Enhancing the human phenotype ontology for use by the layperson
Vasilevsky, N. A., Engelstad, M. E., Foster, E. D., Haendel, M. A., Mungall, C. J., Robinson, P. & Köhler, S., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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Foot-based intonation for text-to-speech synthesis using neural networks
Langarani, M. S. E. & van Santen, J., 2016, In: Proceedings of the International Conference on Speech Prosody. 2016-January, p. 1009-1013 5 p.Research output: Contribution to journal › Conference article › peer-review
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Gold-standard ontology-based annotation of concepts in biomedical text in the CRAFT corpus: Updates and extensions
Bada, M., Hunter, L., Vasilevsky, N. & Haendel, M., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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Innovative approaches to combining genotype, phenotype, epigenetic, and exposure data for precision diagnostics
Haendel, M. A., Kann, M. G. & Washington, N. L., 2016, In: Pacific Symposium on Biocomputing. p. 93-95 3 p.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations -
Measuring turn-taking offsets in human-human dialogues
Lunsford, R., Heeman, P. A. & Rennie, E., 2016, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 08-12-September-2016, p. 2895-2899 5 p.Research output: Contribution to journal › Conference article › peer-review
4 Scopus citations -
Primer for image informatics in personalized medicine
Chang, Y. H., Foley, P., Azimi, V., Borkar, R. & Lefman, J., 2016, In: Procedia Engineering. 159, p. 58-65 8 p.Research output: Contribution to journal › Conference article › peer-review
Open Access4 Scopus citations -
SEPIO: A semantic model for the integration and analysis of scientific evidence
Brush, M. H., Shefchek, K. & Haendel, M., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
4 Scopus citations -
Supporting database annotations and beyond with the Evidence & Conclusion Ontology (ECO)
Chibucos, M. C., Nadendla, S., Munro, J. B., Mitraka, E., Olley, D., Vasilevsky, N. A., Brush, M. H. & Giglio, M., 2016, In: CEUR Workshop Proceedings. 1747Research output: Contribution to journal › Conference article › peer-review
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The discourse marker "so" in turn-taking and turn-releasing behavior
Rennie, E., Lunsford, R. & Heeman, P. A., 2016, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 08-12-September-2016, p. 1280-1284 5 p.Research output: Contribution to journal › Conference article › peer-review
2 Scopus citations -
Using clinician annotations to improve automatic speech recognition of stuttered speech
Heeman, P. A., Lunsford, R., McMillin, A. & Yaruss, J. S., 2016, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 08-12-September-2016, p. 2651-2655 5 p.Research output: Contribution to journal › Conference article › peer-review
16 Scopus citations -
Using past speaker behavior to better predict turn transitions
Meshorer, T. & Heeman, P. A., 2016, In: Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. 08-12-September-2016, p. 2900-2904 5 p.Research output: Contribution to journal › Conference article › peer-review
11 Scopus citations