Guanming Wu

2003

The genome knowledgebase: A resource for biologists and bioinformaticists

Joshi-Tope, G., Vastrik, I., Gopinath, G. R., Matthews, L., Schmidt, E., Gillespie, M., D'Eustachio, P., Jassal, B., Lewis, S., Wu, G., Birney, E. & Stein, L., 2003, In: Cold Spring Harbor symposia on quantitative biology. 68, p. 237-243 7 p.

Research output: Contribution to journal › Article › peer-review

44 Scopus citations

2005

Reactome: A knowledgebase of biological pathways

Joshi-Tope, G., Gillespie, M., Vastrik, I., D'Eustachio, P., Schmidt, E., de Bono, B., Jassal, B., Gopinath, G. R., Wu, G. R., Matthews, L., Lewis, S., Birney, E. & Stein, L., Jan 1 2005, In: Nucleic acids research. 33, DATABASE ISS., p. D428-D432

Research output: Contribution to journal › Article › peer-review

Open Access

1052 Scopus citations

2006

Reactome - A knowledgebase of biological pathways

Schmidt, E., Birney, E., Croft, D., De Bono, B., D'Eustachio, P., Gillespie, M., Gopinath, G., Jassal, B., Lewis, S., Matthews, L., Stein, L., Vastrik, I. & Wu, G., 2006, In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4277 LNCS - I, p. 710-719 10 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

5 Scopus citations

2007

Reactome: A knowledge base of biologic pathways and processes

Vastrik, I., D'Eustachio, P., Schmidt, E., Joshi-Tope, G., Gopinath, G., Croft, D., de Bono, B., Gillespie, M., Jassal, B., Lewis, S., Matthews, L., Wu, G., Birney, E. & Stein, L., Mar 16 2007, In: Genome biology. 8, 3, R39.

Research output: Contribution to journal › Article › peer-review

Open Access

497 Scopus citations

2008

Arabidopsis reactome: A foundation knowledgebase for plant systems biology

Tsesmetzis, N., Couchman, M., Higgins, J., Smith, A., Doonan, J. H., Seifert, G. J., Schmidt, E. E., Vastrik, I., Birney, E., Wu, G., D'Eustachio, P., Stein, L. D., Morris, R. J., Bevan, M. W. & Walsh, S. V., Jun 2008, In: Plant Cell. 20, 6, p. 1426-1436 11 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

45 Scopus citations

2009

Erratum: The systems biology graphical notation (Nature Biotechnology (2009) 27 (735-741))

Le Novère, N., Hucka, M., Mi, H., Moodie, S., Schreiber, F., Sorokin, A., Demir, E., Wegner, K., Aladjem, M. I., Wimalaratne, S. M., Bergman, F. T., Gauges, R., Ghazal, P., Kawaji, H., Li, L., Matsuoka, Y., Villéger, A., Boyd, S. E., Calzone, L., Courtot, M., & 19 othersDogrusoz, U., Freeman, T. C., Funahashi, A., Ghosh, S., Jouraku, A., Kim, S., Kolpakov, F., Luna, A., Sahle, S., Schmidt, E., Watterson, S., Wu, G., Goryanin, I., Kell, D. B., Sander, C., Sauro, H., Snoep, J. L., Kohn, K. & Kitano, H., Sep 2009, In: Nature biotechnology. 27, 9, p. 864 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

3 Scopus citations

Reactome knowledgebase of human biological pathways and processes

Matthews, L., Gopinath, G., Gillespie, M., Caudy, M., Croft, D., de Bono, B., Garapati, P., Hemish, J., Hermjakob, H., Jassal, B., Kanapin, A., Lewis, S., Mahajan, S., May, B., Schmidt, E., Vastrik, I., Wu, G., Birney, E., Stein, L. & D'eustachio, P., 2009, In: Nucleic acids research. 37, SUPPL. 1, p. D619-D622

Research output: Contribution to journal › Article › peer-review

Open Access

689 Scopus citations

The Systems Biology Graphical Notation

Novère, N. L., Hucka, M., Mi, H., Moodie, S., Schreiber, F., Sorokin, A., Demir, E., Wegner, K., Aladjem, M. I., Wimalaratne, S. M., Bergman, F. T., Gauges, R., Ghazal, P., Kawaji, H., Li, L., Matsuoka, Y., Villéger, A., Boyd, S. E., Calzone, L., Courtot, M., & 19 othersDogrusoz, U., Freeman, T. C., Funahashi, A., Ghosh, S., Jouraku, A., Kim, S., Kolpakov, F., Luna, A., Sahle, S., Schmidt, E., Watterson, S., Wu, G., Goryanin, I., Kell, D. B., Sander, C., Sauro, H., Snoep, J. L., Kohn, K. & Kitano, H., Aug 2009, In: Nature biotechnology. 27, 8, p. 735-741 7 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

669 Scopus citations

2010

A human functional protein interaction network and its application to cancer data analysis

Wu, G., Feng, X. & Stein, L., May 19 2010, In: Genome biology. 11, 5, R53.

Research output: Contribution to journal › Article › peer-review

Open Access

508 Scopus citations

A viral microRNA down-regulates multiple cell cycle genes through mRNA 59′UTRs

Grey, F., Tirabassi, R., Meyers, H., Wu, G., McWeeney, S., Hook, L. & Nelson, J., Jun 2010, In: PLoS pathogens. 6, 6

Research output: Contribution to journal › Article › peer-review

Open Access

176 Scopus citations

Erratum: The BioPAX community standard for pathway data sharing (Nat. Biotechnol. (2010) 28 (935-942)

Demir, E., Paley, S., Fukuda, K., Lemer, C., Vastrik, I., Wu, G., D'Eustachio, P., Schaefer, C., Luciano, J., Schacherer, F., Martinez-Flores, I., Hu, Z., Jimenez-Jacinto, V., Joshi-Tope, G., Kandasamy, K., Lopez-Fuentes, A. C., Mi, H., Pichler, E., Rodchenkov, I., Splendiani, A., & 69 othersTkachev, S., Zucker, J., Gopinath, G., Rajasimha, H., Ramakrishnan, R., Shah, I., Syed, M., Anwar, N., Babur, O., Blinov, M., Brauner, E., Corwin, D., Donaldson, S., Gibbons, F., Goldberg, R., Hornbeck, P., Luna, A., Murray-Rust, P., Neumann, E., Reubenacker, O., Samwald, M., Van Iersel, M., Wimalaratne, S., Allen, K., Braun, B., Whirl-Carrillo, M., Cheung, K. H., Dahlquist, K., Finney, A., Gillespie, M., Glass, E., Gong, L., Haw, R., Honig, M., Hubaut, O., Kane, D., Krupa, S., Kutmon, M., Leonard, J., Marks, D., Merberg, D., Petri, V., Pico, A., Ravenscroft, D., Ren, L., Shah, N., Sunshine, M., Tang, R., Whaley, R., Letovksy, S., Buetow, K. H., Rzhetsky, A., Schachter, V., Sobral, B. S., Dogrusoz, U., McWeeney, S., Aladjem, M., Birney, E., Collado-Vides, J., Goto, S., Hucka, M., Novère, N. L., Maltsev, N., Pandey, A., Thomas, P., Wingender, E., Karp, P. D., Sander, C. & Bader, G. D., Dec 2010, In: Nature biotechnology. 28, 12, p. 1308 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

3 Scopus citations

The BioPAX community standard for pathway data sharing

Demir, E., Cary, M. P., Paley, S., Fukuda, K., Lemer, C., Vastrik, I., Wu, G., D'Eustachio, P., Schaefer, C., Luciano, J., Schacherer, F., Martinez-Flores, I., Hu, Z., Jimenez-Jacinto, V., Joshi-Tope, G., Kandasamy, K., Lopez-Fuentes, A. C., Mi, H., Pichler, E., Rodchenkov, I., & 70 othersSplendiani, A., Tkachev, S., Zucker, J., Gopinath, G., Rajasimha, H., Ramakrishnan, R., Shah, I., Syed, M., Anwar, N., Babur, Ö., Blinov, M., Brauner, E., Corwin, D., Donaldson, S., Gibbons, F., Goldberg, R., Hornbeck, P., Luna, A., Murray-Rust, P., Neumann, E., Reubenacker, O., Samwald, M., Van Iersel, M., Wimalaratne, S., Allen, K., Braun, B., Whirl-Carrillo, M., Cheung, K. H., Dahlquist, K., Finney, A., Gillespie, M., Glass, E., Gong, L., Haw, R., Honig, M., Hubaut, O., Kane, D., Krupa, S., Kutmon, M., Leonard, J., Marks, D., Merberg, D., Petri, V., Pico, A., Ravenscroft, D., Ren, L., Shah, N., Sunshine, M., Tang, R., Whaley, R., Letovksy, S., Buetow, K. H., Rzhetsky, A., Schachter, V., Sobral, B. S., Dogrusoz, U., McWeeney, S., Aladjem, M., Birney, E., Collado-Vides, J., Goto, S., Hucka, M., Novère, N. L., Maltsev, N., Pandey, A., Thomas, P., Wingender, E., Karp, P. D., Sander, C. & Bader, G. D., Sep 2010, In: Nature biotechnology. 28, 9, p. 935-942 8 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

531 Scopus citations

Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis

Voight, B. F., Scott, L. J., Steinthorsdottir, V., Morris, A. P., Dina, C., Welch, R. P., Zeggini, E., Huth, C., Aulchenko, Y. S., Thorleifsson, G., McCulloch, L. J., Ferreira, T., Grallert, H., Amin, N., Wu, G., Willer, C. J., Raychaudhuri, S., McCarroll, S. A., Langenberg, C., Hofmann, O. M., & 138 othersDupuis, J., Qi, L., Segrè, A. V., Van Hoek, M., Navarro, P., Ardlie, K., Balkau, B., Benediktsson, R., Bennett, A. J., Blagieva, R., Boerwinkle, E., Bonnycastle, L. L., Boström, K. B., Bravenboer, B., Bumpstead, S., Burtt, N. P., Charpentier, G., Chines, P. S., Cornelis, M., Couper, D. J., Crawford, G., Doney, A. S. F., Elliott, K. S., Elliott, A. L., Erdos, M. R., Fox, C. S., Franklin, C. S., Ganser, M., Gieger, C., Grarup, N., Green, T., Griffin, S., Groves, C. J., Guiducci, C., Hadjadj, S., Hassanali, N., Herder, C., Isomaa, B., Jackson, A. U., Johnson, P. R. V., Jørgensen, T., Kao, W. H. L., Klopp, N., Kong, A., Kraft, P., Kuusisto, J., Lauritzen, T., Li, M., Lieverse, A., Lindgren, C. M., Lyssenko, V., Marre, M., Meitinger, T., Midthjell, K., Morken, M. A., Narisu, N., Nilsson, P., Owen, K. R., Payne, F., Perry, J. R. B., Petersen, A. K., Platou, C., Proença, C., Prokopenko, I., Rathmann, W., Rayner, N. W., Robertson, N. R., Rocheleau, G., Roden, M., Sampson, M. J., Saxena, R., Shields, B. M., Shrader, P., Sigurdsson, G., Sparsø, T., Strassburger, K., Stringham, H. M., Sun, Q., Swift, A. J., Thorand, B., Tichet, J., Tuomi, T., Van Dam, R. M., Van Haeften, T. W., Van Herpt, T., Van Vliet-Ostaptchouk, J. V., Walters, G. B., Weedon, M. N., Wijmenga, C., Witteman, J., Bergman, R. N., Cauchi, S., Collins, F. S., Gloyn, A. L., Gyllensten, U., Hansen, T., Hide, W. A., Hitman, G. A., Hofman, A., Hunter, D. J., Hveem, K., Laakso, M., Mohlke, K. L., Morris, A. D., Palmer, C. N. A., Pramstaller, P. P., Rudan, I., Sijbrands, E., Stein, L. D., Tuomilehto, J., Uitterlinden, A., Walker, M., Wareham, N. J., Watanabe, R. M., Abecasis, G. R., Boehm, B. O., Campbell, H., Daly, M. J., Hattersley, A. T., Hu, F. B., Meigs, J. B., Pankow, J. S., Pedersen, O., Wichmann, H. E., Barroso, I., Florez, J. C., Frayling, T. M., Groop, L., Sladek, R., Thorsteinsdottir, U., Wilson, J. F., Illig, T., Froguel, P., Van Duijn, C. M., Stefansson, K., Altshuler, D., Boehnke, M. & McCarthy, M. I., Jul 2010, In: Nature genetics. 42, 7, p. 579-589 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1483 Scopus citations

2011

Abdominal aortic aneurysm is associated with a variant in low-density lipoprotein receptor-related protein 1

Bown, M. J., Jones, G. T., Harrison, S. C., Wright, B. J., Bumpstead, S., Baas, A. F., Gretarsdottir, S., Badger, S. A., Bradley, D. T., Burnand, K., Child, A. H., Clough, R. E., Cockerill, G., Hafez, H., Scott, D. J. A., Futers, S., Johnson, A., Sohrabi, S., Smith, A., Thompson, M. M., & 461 othersvan Bockxmeer, F. M., Waltham, M., Matthiasson, S. E., Thorleifsson, G., Thorsteinsdottir, U., Blankensteijn, J. D., Teijink, J. A. W., Wijmenga, C., de Graaf, J., Kiemeney, L. A., Assimes, T. L., McPherson, R., Folkersen, L., Franco-Cereceda, A., Palmen, J., Smith, A. J., Sylvius, N., Wild, J. B., Refstrup, M., Edkins, S., Gwilliam, R., Hunt, S. E., Potter, S., Lindholt, J. S., Frikke-Schmidt, R., Tybjærg-Hansen, A., Hughes, A. E., Golledge, J., Norman, P. E., van Rij, A., Powell, J. T., Eriksson, P., Stefansson, K., Thompson, J. R., Humphries, S. E., Sayers, R. D., Deloukas, P., Samani, N. J., Schunkert, H., König, I. R., Kathiresan, S., Reilly, M. P., Holm, H., Preuss, M., Stewart, A. F. R., Barbalic, M., Gieger, C., Absher, D., Aherrahrou, Z., Allayee, H., Altshuler, D., Anand, S. S., Andersen, K., Anderson, J. L., Ardissino, D., Ball, S. G., Balmforth, A. J., Barnes, T. A., Becker, D. M., Becker, L. C., Berger, K., Bis, J. C., Matthijs Boekholdt, S., Boerwinkle, E., Braund, P. S., Susan Burnett, M., Buysschaert, I., Carlquist, J. F., Chen, L., Cichon, S., Codd, V., Davies, R. W., Dedoussis, G., Dehghan, A., Demissie, S., Devaney, J. M., Diemert, P., Do, R., Doering, A., Eifert, S., El Mokhtari, N. E., Ellis, S. G., Elosua, R., Engert, J. C., Epstein, S. E., de Faire, U., Fischer, M., Folsom, A. R., Freyer, J., Gigante, B., Girelli, D., Gudnason, V., Gulcher, J. R., Halperin, E., Hammond, N., Hazen, S. L., Hofman, A., Horne, B. D., Illig, T., Iribarren, C., Wouter Jukema, J., Kaiser, M. A., Kaplan, L. M., Kastelein, J. J. P., Khaw, K. T., Knowles, J. W., Kolovou, G., Kong, A., Laaksonen, R., Lambrechts, D., Leander, K., Lettre, G., Li, M., Lieb, W., Loley, C., Lotery, A. J., Mannucci, P. M., Maouche, S., Martinelli, N., McKeown, P. P., Meisinger, C., Meitinger, T., Melander, O., Angelica Merlini, P., Mooser, V., Morgan, T., Mühleisen, T. W., Muhlestein, J. B., Münzel, T., Musunuru, K., Nahrstaedt, J., Nelson, C. P., Nöthen, M. M., Olivieri, O., Patel, R. S., Patterson, C. C., Peters, A., Peyvandi, F., Qu, L., Quyyumi, A. A., Rader, D. J., Rallidis, L. S., Rice, C., Rosendaal, F. R., Rubin, D., Salomaa, V., Lourdes Sampietro, M., Sandhu, M. S., Schadt, E., Schäfer, A., Schillert, A., Schreiber, S., Schrezenmeir, J., Schwartz, S. M., Siscovick, D. S., Sivananthan, M., Sivapalaratnam, S., Smith, T. B., Snoep, J. D., Soranzo, N., Spertus, J. A., Stark, K., Stirrups, K., Stoll, M., Wilson Tang, W. H., Tennstedt, S., Thorgeirsson, G., Tomaszewski, M., van Rij, A. M., Voight, B. F., Wareham, N. J., Wells, G. A., Wichmann, H. E., Wild, P. S., Willenborg, C., Witteman, J. C. M., Ye, S., Zeller, T., Ziegler, A., Cambien, F., Goodall, A. H., Adrienne Cupples, L., Quertermous, T., März, W., Hengstenberg, C., Blankenberg, S., Ouwehand, W. H., Hall, A. S., Roberts, R., O'Donnell, C. J., Erdmann, J., Newton-Cheh, C., Johnson, T., Gateva, V., Tobin, M. D., Bochud, M., Coin, L., Najjar, S. S., Hua Zhao, J., Heath, S. C., Eyheramendy, S., Papadakis, K., Scott, L. J., Zhang, F., Farrall, M., Tanaka, T., Wallace, C., Chambers, J. C., Nilsson, P., van der Harst, P., Polidoro, S., Grobbee, D. E., Onland-Moret, N. C., Bots, M. L., Wain, L. V., Elliott, K. S., Teumer, A., Luan, J., Lucas, G., Kuusisto, J., Burton, P. R., Hadley, D., McArdle, W. L., Brown, M., Dominiczak, A., Newhouse, S. J., Webster, J., Zeggini, E., Beckmann, J. S., Lim, N., Song, K., Vollenweider, P., Waeber, G., Waterworth, D. M., Yuan, X., Groop, L., Orho-Melander, M., Allione, A., Di Gregorio, A., Guarrera, S., Panico, S., Ricceri, F., Romanazzi, V., Sacerdote, C., Vineis, P., Barroso, I., Luben, R. N., Crawford, G. J., Jousilahti, P., Perola, M., Boehnke, M., Bonnycastle, L. L., Jackson, A. U., Mohlke, K. L., Stringham, H. M., Valle, T. T., Willer, C. J., Bergman, R. N., Morken, M. A., Döring, A., Org, E., Pfeufer, A., Marrugat, J., Subirana, I., Freimer, N. B., Hartikainen, A. L., McCarthy, M. I., O'Reilly, P. F., Peltonen, L., Pouta, A., de Jong, P. E., Snieder, H., van Gilst, W. H., Clarke, R., Goel, A., Hamsten, A., Peden, J. F., Seedorf, U., Syvänen, A. C., Tognoni, G., Lakatta, E. G., Sanna, S., Scheet, P., Schlessinger, D., Scuteri, A., Dörr, M., Ernst, F., Felix, S. B., Homuth, G., Lorbeer, R., Reffelmann, T., Rettig, R., Völker, U., Galan, P., Gut, I. G., Hercberg, S., Mark Lathrop, G., Zelenika, D., Williams, F. M., Zhai, G., Laakso, M., Forouhi, N. G., Völzke, H., Uiterwaal, C. S., van der Schouw, Y. T., Numans, M. E., Matullo, G., Navis, G., Berglund, G., Bingham, S. A., Kooner, J. S., Connell, J. M., Bandinelli, S., Ferrucci, L., Watkins, H., Spector, T. D., Tuomilehto, J., Strachan, D. P., Laan, M., Meneton, P., Uda, M., Jarvelin, M. R., Loos, R. J. F., Elliott, P., Abecasis, G. R., Caulfield, M., Munroe, P. B., Steinthorsdottir, V., Morris, A. P., Dina, C., Welch, R. P., Huth, C., Aulchenko, Y. S., McCulloch, L. J., Ferreira, T., Grallert, H., Amin, N., Wu, G., Raychaudhuri, S., McCarroll, S. A., Langenberg, C., Hofmann, O. M., Dupuis, J., Qi, L., Segrè, A. V., van Hoek, M., Navarro, P., Ardlie, K., Balkau, B., Benediktsson, R., Bennett, A. J., Blagieva, R., Bengtsson Boström, K., Bravenboer, B., Burtt, N. P., Charpentier, G., Chines, P. S., Cornelis, M., Couper, D. J., Crawford, G., Doney, A. S. F., Elliott, A. L., Elliott, A. L., Erdos, M. R., Fox, C. S., Franklin, C. S., Ganser, M., Grarup, N., Green, T., Griffin, S., Groves, C. J., Guiducci, C., Hadjadj, S., Hassanali, N., Herder, C., Isomaa, B., Johnson, P. R. V., Jørgensen, T., Kao, W. H. L., Klopp, N., Kraft, P., Lauritzen, T., Lieverse, A., Lindgren, C. M., Lyssenko, V., Marre, M., Midthjell, K., Narisu, N., Owen, K. R., Payne, F., Perry, J. R. B., Petersen, A. K., Platou, C., Proença, C., Prokopenko, I., Rathmann, W., William Rayner, N., Robertson, N. R., Rocheleau, G., Roden, M., Sampson, M. J., Saxena, R., Shields, B. M., Shrader, P., Sigurdsson, G., Sparsø, T., Strassburger, K., Sun, Q., Swift, A. J., Thorand, B., Tichet, J., Tuomi, T., van Dam, R. M., van Haeften, T. W., van Herpt, T., van Vliet-Ostaptchouk, J. V., Bragi Walters, G., Weedon, M. N., Cauchi, S., Gloyn, A. L., Gyllensten, U., Hansen, T., Hide, W. A., Hitman, G. A., Hunter, D. J., Hveem, K., Morris, A. D., Palmer, C. N. A., Pramstaller, P. P., Rudan, I., Sijbrands, E., Stein, L. D., Uitterlinden, A., Walker, M., Watanabe, R. M., Boehm, B. O., Campbell, H., Daly, M. J., Hattersley, A. T., Hu, F. B., Meigs, J. B., Pankow, J. S., Pedersen, O., Florez, J. C., Frayling, T. M., Sladek, R., Wilson, J. F., Froguel, P., van Duijn, C. M., Blair, R. D., Hill, A. A., Gerry Hill, B., Lewis, D. R., McNoe, L. A., Merriman, T. R., Naik, D. K., Vicky Phillips, L., Thomson, I. A., Topless, R., Vasudevan, T. M. & Yu, G., Nov 11 2011, In: American Journal of Human Genetics. 89, 5, p. 619-627 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

155 Scopus citations

Erratum: Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis

Voight, B. F., Scott, L. J., Steinthorsdottir, V., Morris, A. P., Dina, C., Welch, R. P., Zeggini, E., Huth, C., Aulchenko, Y. S., Thorleifsson, G., McCulloch, L. J., Ferreira, T., Grallert, H., Amin, N., Wu, G., Willer, C. J., Raychaudhuri, S., McCarroll, S. A., Langenberg, C., Hofmann, O. M., & 138 othersDupuis, J., Qi, L., Segŕ, A. V., Van Hoek, M., Navarro, P., Ardlie, K., Balkau, B., Benediktsson, R., Bennett, A. J., Blagieva, R., Boerwinkle, E., Bonnycastle, L. L., Bostrám, K. B., Bravenboer, B., Bumpstead, S., Burtt, N. P., Charpentier, G., Chines, P. S., Cornelis, M., Couper, D. J., Crawford, G., Doney, A. S. F., Elliott, K. S., Elliott, A. L., Erdos, M. R., Fox, C. S., Franklin, C. S., Ganser, M., Gieger, C., Grarup, N., Green, T., Griffin, S., Groves, C. J., Guiducci, C., Hadjadj, S., Hassanali, N., Herder, C., Isomaa, B., Jackson, A. U., Johnson, P. R. V., J́rgensen, T., Kao, W. H. L., Klopp, N., Kong, A., Kraft, P., Kuusisto, J., Lauritzen, T., Li, M., Lieverse, A., Lindgren, C. M., Lyssenko, V., Marre, M., Meitinger, T., Midthjell, K., Morken, M. A., Narisu, N., Nilsson, P., Owen, K. R., Payne, F., Perry, J. R. B., Petersen, A. K., Platou, C., Proeńa, C., Prokopenko, I., Rathmann, W., Rayner, N. W., Robertson, N. R., Rocheleau, G., Roden, M., Sampson, M. J., Saxena, R., Shields, B. M., Shrader, P., Sigurdsson, G., Sparsa̧, T., Strassburger, K., Stringham, H. M., Sun, Q., Swift, A. J., Thorand, B., Tichet, J., Tuomi, T., Van Dam, R. M., Van Haeften, T. W., Van Herpt, T., Van Vliet-Ostaptchouk, J. V., Walters, G. B., Weedon, M. N., Wijmenga, C., Witteman, J., Bergman, R. N., Cauchi, S., Collins, F. S., Gloyn, A. L., Gyllensten, U., Hansen, T., Hide, W. A., Hitman, G. A., Hofman, A., Hunter, D. J., Hveem, K., Laakso, M., Mohlke, K. L., Morris, A. D., Palmer, C. N. A., Pramstaller, P. P., Rudan, I., Sijbrands, E., Stein, L. D., Tuomilehto, J., Uitterlinden, A., Walker, M., Wareham, N. J., Watanabe, R. M., Abecasis, G. R., Boehm, B. O., Campbell, H., Daly, M. J., Hattersley, A. T., Hu, F. B., Meigs, J. B., Pankow, J. S., Pedersen, O., Wichmann, H. E., Barroso, I., Florez, J. C., Frayling, T. M., Groop, L., Sladek, R., Thorsteinsdottir, U., Wilson, J. F., Illig, T., Froguel, P., Van Duijn, C. M., Stefansson, K., Altshuler, D., Boehnke, M. & McCarthy, M. I., Feb 2011, In: Nature genetics. 43, 4, p. 388 1 p.

Research output: Contribution to journal › Comment/debate › peer-review

Open Access

5 Scopus citations

Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes

Strawbridge, R. J., Dupuis, J., Prokopenko, I., Barker, A., Ahlqvist, E., Rybin, D., Petrie, J. R., Travers, M. E., Bouatia-Naji, N., Dimas, A. S., Nica, A. C., Wheeler, E., Chen, H., Voight, B. F., Taneera, J., Kanoni, S., Peden, J. F., Turrini, F., Gustafsson, S., Zabena, C., & 670 othersAlmgren, P., Barker, D. J. P., Barnes, D., Dennison, E. M., Eriksson, J. G., Eriksson, P., Eury, E., Folkersen, L., Fox, C. S., Frayling, T. M., Goel, A., Gu, H. F., Horikoshi, M., Isomaa, B., Jackson, A. U., Jameson, K. A., Kajantie, E., Kerr-Conte, J., Kuulasmaa, T., Kuusisto, J., Loos, R. J. F., Luan, J., Makrilakis, K., Manning, A. K., Martínez-Larrad, M. T., Narisu, N., Mannila, M. N., Öhrvik, J., Osmond, C., Pascoe, L., Payne, F., Sayer, A. A., Sennblad, B., Silveira, A., Stančcáková, A., Stirrups, K., Swift, A. J., Syvänen, A. C., Tuomi, T., Van't Hooft, F. M., Walker, M., Weedon, M. N., Xie, W., Zethelius, B., Scott, L. J., Steinthorsdottir, V., Morris, A. P., Dina, C., Welch, R. P., Zeggini, E., Huth, C., Aulchenko, Y. S., Thorleifsson, G., Mcculloch, L. J., Ferreira, T., Grallert, H., Amin, N., Wu, G., Willer, C. J., Raychaudhuri, S., McCarroll, S. A., Hofmann, O. M., Qi, L., Segre, A. V., Van Hoek, M., Navarro, P., Ardlie, K., Balkau, B., Benediktsson, R., Bennett, A. J., Blagieva, R., Boerwinkle, E., Bonnycastle, L. L., Bostrom, K. B., Bravenboer, B., Bumpstead, S., Burtt, N. P., Charpentier, G., Chines, P. S., Cornelis, M., Couper, D. J., Crawford, G., Doney, A. S. F., Elliott, K. S., Elliott, A. L., Erdos, M. R., Franklin, C. S., Ganser, M., Gieger, C., Grarup, N., Green, T., Griffin, S., Groves, C. J., Guiducci, C., Hadjadj, S., Hassanali, N., Herder, C., Johnson, P. R. V., Jorgensen, T., Kao, W. H. L., Klopp, N., Kong, A., Kraft, P., Lauritzen, T., Li, M., Lieverse, A., Lindgren, C. M., Lyssenko, V., Marre, M., Meitinger, T., Midthjell, K., Morken, M. A., Nilsson, P., Owen, K. R., Perry, J. R. B., Petersen, A. K., Platou, C., Proenca, C., Rathmann, W., Rayner, N. W., Robertson, N. R., Rocheleau, G., Roden, M., Sampson, M. J., Saxena, R., Shields, B. M., Shrader, P., Sigurdsson, G., Sparso, T., Strassburger, K., Stringham, H. M., Sun, Q., Thorand, B., Tichet, J., Van Dam, R. M., Van Haeften, T. W., Van Herpt, T., Van Vliet-Ostaptchouk, J. V., Walters, G. B., Wijmenga, C., Witteman, J. C. M., Bergman, R. N., Cauchi, S., Collins, F. S., Gloyn, A. L., Gyllensten, U., Hansen, T., Hide, W. A., Hitman, G. A., Hofman, A., Hunter, D. J., Hveem, K., Laakso, M., Mohlke, K. L., Morris, A. D., Palmer, C. N. A., Pramstaller, P. P., Rudan, I., Sijbrands, E., Stein, L. D., Tuomilehto, J., Uitterlinden, A. G., Wareham, N. J., Watanabe, R. M., Abecasis, G. R., Boehm, B. O., Campbell, H., Daly, M. J., Hattersley, A. T., Hu, F. B., Meigs, J. B., Pankow, J. S., Pedersen, O., Wichmann, H. E., Barroso, I., Groop, L., Sladek, R., Thorsteinsdottir, U., Wilson, J. F., Illig, T., Froguel, P., Van Duijn, C. M., Stefansson, K., Altshuler, D., Boehnke, M., McCarthy, M. I., Speliotes, E. K., Berndt, S. I., Monda, K. L., Allen, H. L., Magi, R., Randall, J. C., Vedantam, S., Winkler, T. W., Workalemahu, T., Heid, I. M., Wood, A. R., Weyant, R. J., Estrada, K., Liang, L., Nemesh, J., Park, J. H., Kilpelainen, T. O., Yang, J., Esko, T., Feitosa, M. F., Kutalik, Z., Mangino, M., Scherag, A., Smith, A. V., Zhao, J. H., Aben, K. K., Absher, D. M., Dixon, A. L., Fisher, E., Glazer, N. L., Goddard, M. E., Heard-Costa, N. L., Hoesel, V., Hottenga, J. J., Johansson, A., Johnson, T., Ketkar, S., Lamina, C., Li, S., Moffatt, M. F., Myers, R. H., Peters, M. J., Preuss, M., Ripatti, S., Rivadeneira, F., Sandholt, C., Timpson, N. J., Tyrer, J. P., Van Wingerden, S., White, C. C., Wiklund, F., Barlassina, C., Chasman, D. I., Cooper, M. N., Jansson, J. O., Lawrence, R. W., Pellikka, N., Shi, J., Thiering, E., Alavere, H., Alibrandi, M. T. S., Arnold, A. M., Aspelund, T., Atwood, L. D., Balmforth, A. J., Ben-Shlomo, Y., Bergmann, S., Biebermann, H., Blakemore, A. I. F., Boes, T., Bornstein, S. R., Brown, M. J., Buchanan, T. A., Busonero, F., Cappuccio, F. P., Cavalcanti-Proenca, C., Chen, Y. D. I., Chen, C. M., Clarke, R., Coin, L., Connell, J., Day, I. N. M., Den Heijer, M., Duan, J., Ebrahim, S., Elliott, P., Elosua, R., Eiriksdottir, G., Facheris, M. F., Felix, S. B., Fischer-Posovszky, P., Folsom, A. R., Friedrich, N., Freimer, N. B., Fu, M., Gaget, S., Gejman, P. V., Geus, E. J. C., Gjesing, A. P., Goyette, P., Grasler, J., Greenawalt, D. M., Gudnason, V., Hartikainen, A. L., Hall, A. S., Havulinna, A. S., Hayward, C., Heath, A. C., Hengstenberg, C., Hicks, A. A., Hinney, A., Homuth, G., Hui, J., Igl, W., Iribarren, C., Jacobs, K. B., Jarick, I., Jewell, E., John, U., Jousilahti, P., Jula, A., Kaakinen, M., Kaplan, L. M., Kathiresan, S., Kettunen, J., Kinnunen, L., Knowles, J. W., Kolcic, I., König, I. R., Koskinen, S., Kovacs, P., Kvaloy, K., Laitinen, J., Lantieri, O., Lanzani, C., Launer, L. J., Lecoeur, C., Lehtimaki, T., Lettre, G., Liu, J., Lokki, M. L., Lorentzon, M., Luben, R. N., Ludwig, B., Manunta, P., Marek, D., Martin, N. G., McArdle, W. L., McCarthy, A., McKnight, B., Melander, O., Meyre, D., Montgomery, G. W., Mulic, R., Ngwa, J. S., Nelis, M., Neville, M. J., Nyholt, D. R., O'Donnell, C. J., O'Rahilly, S., Ong, K. K., Oostra, B., Pare, G., Parker, A. N., Perola, M., Pichler, I., Pietilainen, K. H., Platou, C. G. P., Polasek, O., Pouta, A., Rafelt, S., Raitakari, O., Rayner, N. W., Ridderstrale, M., Rief, W., Ruokonen, A., Rzehak, P., Salomaa, V., Sanders, A. R., Sandhu, M. S., Sanna, S., Saramies, J., Savolainen, M. J., Scherag, S., Schipf, S., Schreiber, S., Schunkert, H., Silander, K., Sinisalo, J., Siscovick, D. S., Smit, J. H., Soranzo, N., Sovio, U., Stephens, J., Surakka, I., Tammesoo, M. L., Tardif, J. C., Teder-Laving, M., Teslovich, T. M., Thompson, J. R., Thomson, B., Tonjes, A., Van Meurs, J. B. J., Van Ommen, G. J., Vatin, V., Viikari, J., Visvikis-Siest, S., Vitart, V., Vogel, C. I. G., Waite, L. L., Wallaschofski, H., Widen, E., Wiegand, S., Wild, S. H., Willemsen, G., Witte, D. R., Xu, J., Zhang, Q., Zgaga, L., Ziegler, A., Zitting, P., Beilby, J. P., Farooqi, I. S., Hebebrand, J., Huikuri, H. V., James, A. L., Kahonen, M., Levinson, D. F., Macciardi, F., Nieminen, M. S., Ohlsson, C., Palmer, L. J., Ridker, P. M., Stumvoll, M., Beckmann, J. S., Boeing, H., Boomsma, D. I., Caulfield, M. J., Chanock, S. J., Cupples, L. A., Smith, G. D., Erdmann, J., Gronberg, H., Hall, P., Harris, T. B., Hayes, R. B., Heinrich, J., Jarvelin, M. R., Kaprio, J., Karpe, F., Khaw, K. T., Kiemeney, L. A., Krude, H., Lawlor, D. A., Metspalu, A., Munroe, P. B., Ouwehand, W. H., Penninx, B. W., Peters, A., Quertermous, T., Reinehr, T., Rissanen, A., Samani, N. J., Schwarz, P. E. H., Shuldiner, A. R., Spector, T. D., Uda, M., Valle, T. T., Wabitsch, M., Waeber, G., Watkins, H., Wright, A. F., Zillikens, M. C., Chatterjee, N., Purcell, S., Schadt, E. E., Visscher, P. M., Assimes, T. L., Borecki, I. B., Deloukas, P., Haritunians, T., Kaplan, R. C., O'Connell, J. R., Peltonen, L., Schlessinger, D., Strachan, D. P., North, K. E., Hirschhorn, J. N., Ingelsson, E., Parts, L., Glass, D., Nisbet, J., Barrett, A., Sekowska, M., Potter, S., Grundberg, E., Small, K., Hedman, A. K., Bataille, V., Bell, J. T., Surdulescu, G., Ingle, C., Nestle, F. O., Di Meglio, P., Min, J. L., Wilk, A., Hammond, C. J., Yang, T. P., Montgomery, S. B., Zondervan, K. T., Durbin, R., Ahmadi, K., Dermitzakis, E. T., Reilly, M. P., Holm, H., Stewart, A. F. R., Barbalic, M., Aherrahrou, Z., Allayee, H., Anand, S. S., Andersen, K., Anderson, J. L., Ardissino, D., Ball, S. G., Barnes, T. A., Becker, D. M., Becker, L. C., Berger, K., Bis, J. C., Boekholdt, S. M., Braund, P. S., Burnett, M. S., Buysschaert, I., Carlquist, J. F., Chen, L., Codd, V., Davies, R. W., Cichon, S., Dedoussis, G. V., Demissie, S., Dehghan, A., Devaney, J. M., Diemert, P., Do, R., Doering, A., Eifert, S., El Mokhtari, N. E., Ellis, S. G., Engert, J. C., Epstein, S. E., De Faire, U., Fischer, M., Freyer, J., Gigante, B., Girelli, D., Gretarsdottir, S., Gulcher, J. R., Halperin, E., Hammond, N., Hazen, S. L., Horne, B. D., Jones, G. T., Jukema, J. W., Kaiser, M. A., Kastelein, J. J. P., Kolovou, G., Laaksonen, R., Lambrechts, D., Leander, K., Li, M., Lieb, W., Loley, C., Lotery, A. J., Mannucci, P. M., Maouche, S., Martinelli, N., McKeown, P. P., Meisinger, C., Merlini, P. A., Mooser, V., Morgan, T., Mühleisen, T. W., Muhlestein, J. B., Münzel, T., Musunuru, K., Nahrstaedt, J., Nelson, C. P., Nöthen, M. M., Olivieri, O., Patel, R. S., Patterson, C. C., Peyvandi, F., Qu, L., Quyyumi, A. A., Rader, D. J., Rallidis, L. S., Rice, C., Rosendaal, F. R., Rubin, D., Sampietro, M. L., Sandhu, M. S., Schäfer, A., Schillert, A., Schrezenmeir, J., Schwartz, S. M., Sivananthan, M., Sivapalaratnam, S., Smith, T. B., Snoep, J. D., Spertus, J. A., Stark, K., Stoll, M., Wilson Tang, W. H., Tennstedt, S., Thorgeirsson, G., Tomaszewski, M., Van Rij, A. M., Wells, G. A., Wild, P. S., Willenborg, C., Wright, B. J., Ye, S., Zeller, T., Cambien, F., Goodall, A. H., Marz, W., Blankenberg, S., Roberts, R., McPherson, R., Hopewell, J. C., Parish, S., Offer, A., Bowman, L., Sleight, P., Armitage, J., Peto, R., Collins, R., Chambers, J. C., Ahmed, N., Donnelly, P., Kooner, A. S., Scott, J., Sehmi, J., Zhang, W., Kooner, J., Sabater-Lleal, M., Mälarstig, A., Hellénius, M. L., Olsson, G., Rust, S., Assmann, G., Seedorf, U., Barlera, S., Tognoni, G., Franzosi, M. G., Linksted, P., Ongen, H., Kyriakou, T., Green, F., Farrall, M., Saleheen, D., Rasheed, A., Zaidi, M., Shah, N., Samuel, M., Mallick, N., Azhar, M., Zaman, K., Samad, A., Ishaq, M., Gardezi, A., Memon, F. U. R., Frossard, P., Danesh, J., Östenson, C. G., Lind, L., Cooper, C. C., Serrano-Ríos, M., Ferrannini, E., Forsen, T. J., Pattou, F., Langenberg, C., Hamsten, A. & Florez, J. C., Oct 1 2011, In: Diabetes. 60, 10, p. 2624-2634 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

289 Scopus citations

Identification of a Therapeutic Strategy Targeting Amplified FGF19 in Liver Cancer by Oncogenomic Screening

Sawey, E. T., Chanrion, M., Cai, C., Wu, G., Zhang, J., Zender, L., Zhao, A., Busuttil, R. W., Yee, H., Stein, L., French, D. M., Finn, R. S., Lowe, S. W. & Powers, S., Mar 8 2011, In: Cancer Cell. 19, 3, p. 347-358 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

349 Scopus citations

PSICQUIC and PSISCORE: Accessing and scoring molecular interactions

Aranda, B., Blankenburg, H., Kerrien, S., Brinkman, F. S. L., Ceol, A., Chautard, E., Dana, J. M., De Las Rivas, J., Dumousseau, M., Galeota, E., Gaulton, A., Goll, J., Hancock, R. E. W., Isserlin, R., Jimenez, R. C., Kerssemakers, J., Khadake, J., Lynn, D. J., Michaut, M., O'Kelly, G., & 20 othersOno, K., Orchard, S., Prieto, C., Razick, S., Rigina, O., Salwinski, L., Simonovic, M., Velankar, S., Winter, A., Wu, G., Bader, G. D., Cesareni, G., Donaldson, I. M., Eisenberg, D., Kleywegt, G. J., Overington, J., Ricard-Blum, S., Tyers, M., Albrecht, M. & Hermjakob, H., Jul 2011, In: Nature Methods. 8, 7, p. 528-529 2 p.

Research output: Contribution to journal › Letter › peer-review

Open Access

216 Scopus citations

Reactome: A database of reactions, pathways and biological processes

Croft, D., O'Kelly, G., Wu, G., Haw, R., Gillespie, M., Matthews, L., Caudy, M., Garapati, P., Gopinath, G., Jassal, B., Jupe, S., Kalatskaya, I., MayMahajan, S., May, B., Ndegwa, N., Schmidt, E., Shamovsky, V., Yung, C., Birney, E., Hermjakob, H., & 2 othersD'Eustachio, P. & Stein, L., Jan 2011, In: Nucleic acids research. 39, SUPPL. 1, p. D691-D697

Research output: Contribution to journal › Article › peer-review

Open Access

1203 Scopus citations

2012

A genome-wide association search for type 2 diabetes genes in african americans

DIAGRAM Consortium, MAGIC Investigators, Anders Hamsten on behalf of Procardis Consortium, DIAGRAM Consortium, GIANT Consortium, Global BPgen Consortium & for the MAGIC investigators, Jan 4 2012, In: PloS one. 7, 1, e29202.

Research output: Contribution to journal › Article › peer-review

Open Access

142 Scopus citations

A network module-based method for identifying cancer prognostic signatures

Wu, G. & Stein, L., 2012, In: Genome biology. 13, 12, p. R112

Research output: Contribution to journal › Article › peer-review

Open Access

125 Scopus citations

Annotating cancer variants and anti-cancer therapeutics in Reactome

Milacic, M., Haw, R., Rothfels, K., Wu, G., Croft, D., Hermjakob, H., D'Eustachio, P. & Stein, L., Dec 2012, In: Cancers. 4, 4, p. 1180-1211 32 p.

Research output: Contribution to journal › Article › peer-review

Open Access

233 Scopus citations

2013

Network-Module-Based Approaches in Cancer Data Analysis

Wu, G. & Stein, L., Apr 8 2013, Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data. Wiley-VCH, Vol. 3. p. 173-192 20 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Systematic MicroRNA Analysis Identifies ATP6V0C as an Essential Host Factor for Human Cytomegalovirus Replication

Pavelin, J., Reynolds, N., Chiweshe, S., Wu, G., Tiribassi, R. & Grey, F., 2013, In: PLoS pathogens. 9, 12, p. 1-13 13 p., e1003820.

Research output: Contribution to journal › Article › peer-review

Open Access

38 Scopus citations

2014

A controlled vocabulary for pathway entities and events

Jupe, S., Jassal, B., Williams, M. & Wu, G., 2014, In: Database. 2014

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Gramene 2013: Comparative plant genomics resources

Monaco, M. K., Stein, J., Naithani, S., Wei, S., Dharmawardhana, P., Kumari, S., Amarasinghe, V., Youens-Clark, K., Thomason, J., Preece, J., Pasternak, S., Olson, A., Jiao, Y., Lu, Z., Bolser, D., Kerhornou, A., Staines, D., Walts, B., Wu, G., D'Eustachio, P., & 6 othersHaw, R., Croft, D., Kersey, P. J., Stein, L., Jaiswal, P. & Ware, D., Jan 1 2014, In: Nucleic acids research. 42, D1, p. D1193-D1199

Research output: Contribution to journal › Article › peer-review

Open Access

149 Scopus citations

Meta-Analysis of Genome-Wide Association Studies in African Americans Provides Insights into the Genetic Architecture of Type 2 Diabetes

The MAGIC investigators & The GIANT consortium, Aug 7 2014, In: PLoS genetics. 10, 8, e1004517.

Research output: Contribution to journal › Article › peer-review

Open Access

166 Scopus citations

ReactomeFIViz: A cytoscape app for pathway and network-based data analysis

Wu, G., Dawson, E., Duong, A., Haw, R. & Stein, L., Sep 12 2014, In: F1000Research. 3, 4431.2.

Research output: Contribution to journal › Article › peer-review

Open Access

173 Scopus citations

The Reactome pathway knowledgebase

Croft, D., Mundo, A. F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., Garapati, P., Gillespie, M., Kamdar, M. R., Jassal, B., Jupe, S., Matthews, L., May, B., Palatnik, S., Rothfels, K., Shamovsky, V., Song, H., Williams, M., Birney, E., & 3 othersHermjakob, H., Stein, L. & D'Eustachio, P., Jan 1 2014, In: Nucleic acids research. 42, D1, p. D472-D477

Research output: Contribution to journal › Article › peer-review

Open Access

1231 Scopus citations

Tumor-suppressive activity of lunatic fringe in prostate through differential modulation of notch receptor activation

Zhang, S., Chung, W. C., Wu, G., Egan, S. E. & Xu, K., Feb 2014, In: Neoplasia (United States). 16, 2, p. 158-167 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

31 Scopus citations

2015

Between pathways and networks lies context: Implications for precision medicine

Laderas, T., Wu, G. & McWeeney, S., Sep 1 2015, In: Science Progress. 98, 3, p. 253-263 11 p.

Research output: Contribution to journal › Article › peer-review

Manic fringe promotes a claudin-low breast cancer phenotype through notch-mediated PIK3CG induction

Zhang, S., Chung, W. C., Wu, G., Egan, S. E., Miele, L. & Xu, K., May 15 2015, In: Cancer Research. 75, 10, p. 1936-1943 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

54 Scopus citations

Pathway and network analysis of cancer genomes

Creixell, P., Reimand, J., Haider, S., Wu, G., Shibata, T., Vazquez, M., Mustonen, V., Gonzalez-Perez, A., Pearson, J., Sander, C., Raphael, B. J., Marks, D. S., Ouellette, B. F. F., Valencia, A., Bader, G. D., Boutros, P. C., Stuart, J. M., Linding, R., Lopez-Bigas, N. & Stein, L. D., Jun 30 2015, In: Nature Methods. 12, 7, p. 615-621 7 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

242 Scopus citations

2016

Reactome from a WikiPathways Perspective

Bohler, A., Wu, G., Kutmon, M., Pradhana, L. A., Coort, S. L., Hanspers, K., Haw, R., Pico, A. R. & Evelo, C. T., May 2016, In: PLoS computational biology. 12, 5, e1004941.

Research output: Contribution to journal › Article › peer-review

Open Access

30 Scopus citations

The reactome pathway knowledgebase

Fabregat, A., Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S., Matthews, L., May, B., Milacic, M., Rothfels, K., Shamovsky, V., Webber, M., Weiser, J., Williams, M., Wu, G., Stein, L., & 2 othersHermjakob, H. & D'Eustachio, P., 2016, In: Nucleic acids research. 44, D1, p. D481-D487

Research output: Contribution to journal › Article › peer-review

Open Access

978 Scopus citations

2017

Comprehensive definition of human immunodominant CD8 antigens in tuberculosis

Lewinsohn, D. A., Swarbrick, G. M., Park, B., Cansler, M. E., Null, M. D., Toren, K. G., Baseke, J., Zalwango, S., Mayanja-Kizza, H., Malone, L. L., Nyendak, M., Wu, G., Guinn, K., McWeeney, S., Mori, T., Chervenak, K. A., Sherman, D. R., Boom, W. H. & Lewinsohn, D. M., Dec 1 2017, In: npj Vaccines. 2, 1, 8.

Research output: Contribution to journal › Article › peer-review

Open Access

37 Scopus citations

Evidence-Based Precision Oncology with the Cancer Targetome

Blucher, A. S., Choonoo, G., Kulesz-Martin, M., Wu, G. & McWeeney, S. K., Dec 2017, In: Trends in pharmacological sciences. 38, 12, p. 1085-1099 15 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

20 Scopus citations

Functional interaction network construction and analysis for disease discovery

Wu, G. & Haw, R., 2017, Methods in Molecular Biology. Humana Press Inc., p. 235-253 19 p. (Methods in Molecular Biology; vol. 1558).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

80 Scopus citations

Plant Reactome: A resource for plant pathways and comparative analysis

Naithani, S., Preece, J., D'Eustachio, P., Gupta, P., Amarasinghe, V., Dharmawardhana, P. D., Wu, G., Fabregat, A., Elser, J. L., Weiser, J., Keays, M., Fuentes, A. M. P., Petryszak, R., Stein, L. D., Ware, D. & Jaiswal, P., Jan 1 2017, In: Nucleic acids research. 45, D1, p. D1029-D1039

Research output: Contribution to journal › Article › peer-review

Open Access

54 Scopus citations

2018

Automation of ReactomeFIViz via CyREST API

Wu, G. & Loney, F., 2018, In: F1000Research. 7, 531.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Network-based predictors of progression in head and neck squamous cell carcinoma

Sanati, N., Iancu, O. D., Wu, G., Jacobs, J. E. & McWeeney, S. K., May 29 2018, In: Frontiers in Genetics. 9, MAY, 183.

Research output: Contribution to journal › Article › peer-review

Open Access

21 Scopus citations

Reactome graph database: Efficient access to complex pathway data

Fabregat, A., Korninger, F., Viteri, G., Sidiropoulos, K., Marin-Garcia, P., Ping, P., Wu, G., Stein, L., D’Eustachio, P. & Hermjakob, H., Jan 2018, In: PLoS computational biology. 14, 1, e1005968.

Research output: Contribution to journal › Article › peer-review

Open Access

167 Scopus citations

The Reactome Pathway Knowledgebase

Fabregat, A., Jupe, S., Matthews, L., Sidiropoulos, K., Gillespie, M., Garapati, P., Haw, R., Jassal, B., Korninger, F., May, B., Milacic, M., Roca, C. D., Rothfels, K., Sevilla, C., Shamovsky, V., Shorser, S., Varusai, T., Viteri, G., Weiser, J., Wu, G., & 3 othersStein, L., Hermjakob, H. & D'Eustachio, P., Jan 1 2018, In: Nucleic acids research. 46, D1, p. D649-D655

Research output: Contribution to journal › Article › peer-review

Open Access

1752 Scopus citations

2019

Acute myeloid leukemia–induced T-cell suppression can be reversed by inhibition of the MAPK pathway

Moshofsky, K. B., Cho, H. J., Wu, G., Romine, K. A., Newman, M. T., Kosaka, Y., McWeeney, S. K. & Lind, E. F., Oct 22 2019, In: Blood Advances. 3, 20, p. 3038-3051 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Scopus citations

Natural product target network reveals potential for cancer combination therapies

Chamberlin, S. R., Blucher, A., Wu, G., Shinto, L., Choonoo, G., Kulesz-Martin, M. & McWeeney, S., 2019, In: Frontiers in Pharmacology. 10, MAY, 557.

Research output: Contribution to journal › Article › peer-review

Open Access

42 Scopus citations

Reactome and ORCID-fine-grained credit attribution for community curation

Viteri, G., Matthews, L., Varusai, T., Gillespie, M., Milacic, M., Cook, J., Weiser, J., Shorser, S., Sidiropoulos, K., Fabregat, A., Haw, R., Wu, G., Stein, L., D'Eustachio, P. & Hermjakob, H., Jan 1 2019, In: Database : the journal of biological databases and curation. 2019

Research output: Contribution to journal › Article › peer-review

Open Access

8 Scopus citations

VIO: Ontology classification and study of vaccine responses given various experimental and analytical conditions

Ong, E., Sun, P., Berke, K., Zheng, J., Wu, G. & He, Y., Dec 23 2019, In: BMC bioinformatics. 20, 704.

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Visualization of drug target interactions in the contexts of pathways and networks with reactomefiviz

Blucher, A. S., McWeeney, S. K., Stein, L. & Wu, G., 2019, In: F1000Research. 8, 908.

Research output: Contribution to journal › Review article › peer-review

Open Access

17 Scopus citations

2020

A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

PCAWG Tumor Subtypes and Clinical Translation Working Group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 728.

Research output: Contribution to journal › Article › peer-review

Open Access

112 Scopus citations

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

PCAWG Drivers and Functional Interpretation Working Group, PCAWG Structural Variation Working Group & PCAWG Consortium, Feb 6 2020, In: Nature. 578, 7793, p. 102-111 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

334 Scopus citations

Guanming Wu

Research output

Search results