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Zheng Xia

Associate Professor

Calculated based on number of publications stored in Pure and citations from Scopus
20132023

Research activity per year

Search results

  • PRMT9 is a Type II methyltransferase that methylates the splicing factor SAP145

    Yang, Y., Hadjikyriacou, A., Xia, Z., Gayatri, S., Kim, D., Zurita-Lopez, C., Kelly, R., Guo, A., Li, W., Clarke, S. G. & Bedford, M. T., Mar 4 2015, In: Nature communications. 6, 6428.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    164 Scopus citations

  • Rbfox2-coordinated alternative splicing of Mef2d and Rock2 controls myoblast fusion during myogenesis

    Singh, R. K., Xia, Z., Bland, C. S., Kalsotra, A., Scavuzzo, M. A., Curk, T., Ule, J., Li, W. & Cooper, T. A., Aug 21 2014, In: Molecular Cell. 55, 4, p. 592-603 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    88 Scopus citations

  • Reversible cardiac disease features in an inducible CUG repeat RNA–expressing mouse model of myotonic dystrophy

    Rao, A. N., Campbell, H. M., Guan, X., Word, T. A., Wehrens, X. H. T., Xia, Z. & Cooper, T. A., Mar 8 2021, In: JCI Insight. 6, 5, e143465.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    10 Scopus citations

  • RNA-seq from archival FFPE breast cancer samples: Molecular pathway fidelity and novel discovery

    Pennock, N. D., Jindal, S., Horton, W., Sun, D., Narasimhan, J., Carbone, L., Fei, S. S., Searles, R., Harrington, C. A., Burchard, J., Weinmann, S., Schedin, P. & Xia, Z., Dec 19 2019, In: BMC Medical Genomics. 12, 1, 195.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    30 Scopus citations

  • Supervised learning of high-confidence phenotypic subpopulations from single-cell data

    Ren, T., Chen, C., Danilov, A. V., Liu, S., Guan, X., Du, S., Wu, X., Sherman, M. H., Spellman, P. T., Coussens, L. M., Adey, A. C., Mills, G. B., Wu, L. Y. & Xia, Z., May 2023, In: Nature Machine Intelligence. 5, 5, p. 528-541 14 p.

    Research output: Contribution to journal › Article › peer-review

    3 Scopus citations

  • TGFβ signaling is critical for maintenance of the tendon cell fate

    Tan, G. K., Pryce, B. A., Stabio, A., Brigande, J. V., Wang, C., Xia, Z., Tufa, S. F., Keene, D. R. & Schweitzer, R., Jan 2020, In: eLife. 9, e52695.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    55 Scopus citations

  • The cancer genome atlas pan-cancer analysis project

    Weinstein, J. N., Collisson, E. A., Mills, G. B., Shaw, K. R. M., Ozenberger, B. A., Ellrott, K., Sander, C., Stuart, J. M., Chang, K., Creighton, C. J., Davis, C., Donehower, L., Drummond, J., Wheeler, D., Ally, A., Balasundaram, M., Birol, I., Butterfield, Y. S. N., Chu, A., Chuah, E., & 316 othersChun, H. J. E., Dhalla, N., Guin, R., Hirst, M., Hirst, C., Holt, R. A., Jones, S. J. M., Lee, D., Li, H. I., Marra, M. A., Mayo, M., Moore, R. A., Mungall, A. J., Robertson, A. G., Schein, J. E., Sipahimalani, P., Tam, A., Thiessen, N., Varhol, R. J., Beroukhim, R., Bhatt, A. S., Brooks, A. N., Cherniack, A. D., Freeman, S. S., Gabriel, S. B., Helman, E., Jung, J., Meyerson, M., Ojesina, A. I., Pedamallu, C. S., Saksena, G., Schumacher, S. E., Tabak, B., Zack, T., Lander, E. S., Bristow, C. A., Hadjipanayis, A., Haseley, P., Kucherlapati, R., Lee, S., Lee, E., Luquette, L. J., Mahadeshwar, H. S., Pantazi, A., Parfenov, M., Park, P. J., Protopopov, A., Ren, X., Santoso, N., Seidman, J., Seth, S., Song, X., Tang, J., Xi, R., Xu, A. W., Yang, L., Zeng, D., Auman, J. T., Balu, S., Buda, E., Fan, C., Hoadley, K. A., Jones, C. D., Meng, S., Mieczkowski, P. A., Parker, J. S., Perou, C. M., Roach, J., Shi, Y., Silva, G. O., Tan, D., Veluvolu, U., Waring, S., Wilkerson, M. D., Wu, J., Zhao, W., Bodenheimer, T., Hayes, D. N., Hoyle, A. P., Jeffreys, S. R., Mose, L. E., Simons, J. V., Soloway, M. G., Baylin, S. B., Berman, B. P., Bootwalla, M. S., Danilova, L., Herman, J. G., Hinoue, T., Laird, P. W., Rhie, S. K., Shen, H., Triche, T., Weisenberger, D. J., Carter, S. L., Cibulskis, K., Chin, L., Zhang, J., Sougnez, C., Wang, M., Getz, G., Dinh, H., Doddapaneni, H. V., Gibbs, R., Gunaratne, P., Han, Y., Kalra, D., Kovar, C., Lewis, L., Morgan, M., Morton, D., Muzny, D., Reid, J., Xi, L., Cho, J., Dicara, D., Frazer, S., Gehlenborg, N., Heiman, D. I., Kim, J., Lawrence, M. S., Lin, P., Liu, Y., Noble, M. S., Stojanov, P., Voet, D., Zhang, H., Zou, L., Stewart, C., Bernard, B., Bressler, R., Eakin, A., Iype, L., Knijnenburg, T., Kramer, R., Kreisberg, R., Leinonen, K., Lin, J., Liu, Y., Miller, M., Reynolds, S. M., Rovira, H., Shmulevich, I., Thorsson, V., Yang, D., Zhang, W., Amin, S., Wu, C. J., Wu, C. C., Akbani, R., Aldape, K., Baggerly, K. A., Broom, B., Casasent, T. D., Cleland, J., Dodda, D., Edgerton, M., Han, L., Herbrich, S. M., Ju, Z., Kim, H., Lerner, S., Li, J., Liang, H., Liu, W., Lorenzi, P. L., Lu, Y., Melott, J., Nguyen, L., Su, X., Verhaak, R., Wang, W., Wong, A., Yang, Y., Yao, J., Yao, R., Yoshihara, K., Yuan, Y., Yung, A. K., Zhang, N., Zheng, S., Ryan, M., Kane, D. W., Aksoy, B. A., Ciriello, G., Dresdner, G., Gao, J., Gross, B., Jacobsen, A., Kahles, A., Ladanyi, M., Lee, W., Lehmann, K. V., Miller, M. L., Ramirez, R., Rätsch, G., Reva, B., Schultz, N., Senbabaoglu, Y., Shen, R., Sinha, R., Sumer, S. O., Sun, Y., Taylor, B. S., Weinhold, N., Fei, S., Spellman, P., Benz, C., Carlin, D., Cline, M., Craft, B., Goldman, M., Haussler, D., Ma, S., Ng, S., Paull, E., Radenbaugh, A., Salama, S., Sokolov, A., Swatloski, T., Uzunangelov, V., Waltman, P., Yau, C., Zhu, J., Hamilton, S. R., Abbott, S., Abbott, R., Dees, N. D., Delehaunty, K., Ding, L., Dooling, D. J., Eldred, J. M., Fronick, C. C., Fulton, R., Fulton, L. L., Kalicki-Veizer, J., Kanchi, K. L., Kandoth, C., Koboldt, D. C., Larson, D. E., Ley, T. J., Lin, L., Lu, C., Magrini, V. J., Mardis, E. R., McLellan, M. D., McMichael, J. F., Miller, C. A., O'Laughlin, M., Pohl, C., Schmidt, H., Smith, S. M., Walker, J., Wallis, J. W., Wendl, M. C., Wilson, R. K., Wylie, T., Zhang, Q., Burton, R., Jensen, M. A., Kahn, A., Pihl, T., Pot, D., Wan, Y., Levine, D. A., Black, A. D., Bowen, J., Frick, J., Gastier-Foster, J. M., Harper, H. A., Helsel, C., Leraas, K. M., Lichtenberg, T. M., McAllister, C., Ramirez, N. C., Sharpe, S., Wise, L., Zmuda, E., Chanock, S. J., Davidsen, T., Demchok, J. A., Eley, G., Felau, I., Sheth, M., Sofia, H., Staudt, L., Tarnuzzer, R., Wang, Z., Yang, L., Zhang, J., Omberg, L., Margolin, A., Raphael, B. J., Vandin, F., Wu, H. T., Leiserson, M. D. M., Benz, S. C., Vaske, C. J., Noushmehr, H., Wolf, D., Veer, L. V. T., Anastassiou, D., Yang, T. H. O., Lopez-Bigas, N., Gonzalez-Perez, A., Tamborero, D., Xia, Z., Li, W., Cho, D. Y., Przytycka, T., Hamilton, M., McGuire, S., Nelander, S., Johansson, P., Jörnsten, R. & Kling, T., Oct 1 2013, In: Nature genetics. 45, 10, p. 1113-1120 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5074 Scopus citations

  • The genomic landscape of estrogen receptor α binding sites in mouse mammary gland

    Palaniappan, M., Nguyen, L., Grimm, S. L., Xi, Y., Xia, Z., Li, W. & Coarfa, C., Aug 1 2019, In: PloS one. 14, 8, e0220311.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    22 Scopus citations

  • The histone-H3K4-specific demethylase KDM5B Binds to its substrate and product through distinct PHD fingers

    Klein, B. J., Piao, L., Xi, Y., Rincon-Arano, H., Rothbart, S. B., Peng, D., Wen, H., Larson, C., Zhang, X., Zheng, X., Cortazar, M. A., Peña, P. V., Mangan, A., Bentley, D. L., Strahl, B. D., Groudine, M., Li, W., Shi, X. & Kutateladze, T. G., 2014, In: Cell Reports. 6, 2, p. 325-335 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    129 Scopus citations

  • Transcriptional profiling identifies an androgen receptor activity-low, stemness program associated with enzalutamide resistance

    Alumkal, J. J., Sun, D., Lu, E., Beer, T. M., Thomas, G. V., Latour, E., Aggarwal, R., Cetnar, J., Ryan, C. J., Tabatabaei, S., Bailey, S., Turina, C. B., Quigley, D. A., Guan, X., Foye, A., Youngren, J. F., Urrutia, J., Huangi, J., Weinstein, A. S., Friedl, V., & 11 othersRettig, M., Reiter, R. E., Spratt, D. E., Gleav, M., Evans, C. P., Stuart, J. M., Chen, Y., Feng, F. Y., Small, E. J., Witte, O. N. & Xia, Z., Jun 2 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 22, p. 12315-12323 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    72 Scopus citations

  • Transcriptional profiling of matched patient biopsies clarifies molecular determinants of enzalutamide-induced lineage plasticity

    Westbrook, T. C., Guan, X., Rodansky, E., Flores, D., Liu, C. J., Udager, A. M., Patel, R. A., Haffner, M. C., Hu, Y. M., Sun, D., Beer, T. M., Foye, A., Aggarwal, R., Quigley, D. A., Youngren, J. F., Ryan, C. J., Gleave, M., Wang, Y., Huang, J., Coleman, I., & 17 othersMorrissey, C., Nelson, P. S., Evans, C. P., Lara, P., Reiter, R. E., Witte, O., Rettig, M., Wong, C. K., Weinstein, A. S., Uzunangelov, V., Stuart, J. M., Thomas, G. V., Feng, F. Y., Small, E. J., Yates, J. A., Xia, Z. & Alumkal, J. J., Dec 2022, In: Nature communications. 13, 1, 5345.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    12 Scopus citations

  • Whole transcriptome sequencing reveals extensive unspliced mRNA in metastatic castration-resistant prostate cancer

    Sowalsky, A. G., Xia, Z., Wang, L., Zhao, H., Chen, S., Bubley, G. J., Balk, S. P. & Li, W., Jan 1 2015, In: Molecular Cancer Research. 13, 1, p. 98-106 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    88 Scopus citations

  • ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression

    Wen, H., Li, Y., Xi, Y., Jiang, S., Stratton, S., Peng, D., Tanaka, K., Ren, Y., Xia, Z., Wu, J., Li, B., Barton, M. C., Li, W., Li, H. & Shi, X., Apr 10 2014, In: Nature. 508, 7495, p. 263-268 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    238 Scopus citations