Functional gene group summarization by clustering MEDLINE abstract sentences.

Jianji Yang; Aaron M. Cohen; William R. Hersh

Functional gene group summarization by clustering MEDLINE abstract sentences.

Jianji Yang, Aaron M. Cohen, William R. Hersh

Medical Informatics and Clinical Epidemiology

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Abstract

Tools to automatically summarize functional gene group information from the biomedical literature will help genomics researchers both better interpret gene expression data and understand biological pathways. In this study, we built a system that takes in a set of genes and MEDLINE records and outputs clusters of genes along with summaries of each cluster by sentence extraction from MEDLINE abstracts. Our preliminary use-case evaluation shows that this approach can identify gene clusters similar to manually generated groupings.

Original language	English (US)
Pages (from-to)	1151
Number of pages	1
Journal	AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium
State	Published - 2006

ASJC Scopus subject areas

General Medicine

Cite this

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abstract = "Tools to automatically summarize functional gene group information from the biomedical literature will help genomics researchers both better interpret gene expression data and understand biological pathways. In this study, we built a system that takes in a set of genes and MEDLINE records and outputs clusters of genes along with summaries of each cluster by sentence extraction from MEDLINE abstracts. Our preliminary use-case evaluation shows that this approach can identify gene clusters similar to manually generated groupings.",

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Functional gene group summarization by clustering MEDLINE abstract sentences.

Abstract

ASJC Scopus subject areas

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