TY - GEN
T1 - Screening of apoptotic genes by morphological analysis of high throughput fluorescence microscopy images
AU - Chae, Yongsu
AU - Kim, Soo Jung
AU - Kim, Desok
PY - 2007
Y1 - 2007
N2 - Apoptosis is a programmed cell death required for development and maintenance of normal tissue. However, cancer cells often evade apoptosis by inactivating apoptotic genes. Thus, the discovery of apoptotic genes has become important in cancer research. We developed a morphological analysis to quantify apoptosis automatically. Cellular images were acquired by high throughput fluorescence microscopy and normalized. Nuclear and chromatin images were segmented by tophat operations and touching nuclei were further separated by erosion, labeling, and conditional dilation. Shape and intensity features were extracted from nuclear and chromatin images to produce discriminant functions by logistic regression. Nuclear objects were classified as isolated and touching with 91.7% accuracy. Apoptotic and mitotic nuclei were identified with 88.8% accuracy. Automatic apoptotic rates were highly correlated with manual rates (ρ = 0.91, p<0.01). Finally, 20 genes that included seven novel apoptotic genes were found out of 21 genes previously reported to show 3-fold increase of apoptosis.
AB - Apoptosis is a programmed cell death required for development and maintenance of normal tissue. However, cancer cells often evade apoptosis by inactivating apoptotic genes. Thus, the discovery of apoptotic genes has become important in cancer research. We developed a morphological analysis to quantify apoptosis automatically. Cellular images were acquired by high throughput fluorescence microscopy and normalized. Nuclear and chromatin images were segmented by tophat operations and touching nuclei were further separated by erosion, labeling, and conditional dilation. Shape and intensity features were extracted from nuclear and chromatin images to produce discriminant functions by logistic regression. Nuclear objects were classified as isolated and touching with 91.7% accuracy. Apoptotic and mitotic nuclei were identified with 88.8% accuracy. Automatic apoptotic rates were highly correlated with manual rates (ρ = 0.91, p<0.01). Finally, 20 genes that included seven novel apoptotic genes were found out of 21 genes previously reported to show 3-fold increase of apoptosis.
UR - http://www.scopus.com/inward/record.url?scp=49349094505&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=49349094505&partnerID=8YFLogxK
U2 - 10.1109/FBIT.2007.46
DO - 10.1109/FBIT.2007.46
M3 - Conference contribution
AN - SCOPUS:49349094505
SN - 0769529992
SN - 9780769529998
T3 - Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, FBIT 2007
SP - 16
EP - 20
BT - Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, FBIT 2007
T2 - Frontiers in the Convergence of Bioscience and Information Technologies, FBIT 2007
Y2 - 11 October 2007 through 13 October 2007
ER -