TY - JOUR
T1 - Cloud computing for genomic data analysis and collaboration
AU - Langmead, Ben
AU - Nellore, Abhinav
N1 - Funding Information:
The authors thank J. Taylor, E. Afgan, M. Schatz, J. Goecks and A. Margolin for reading through a draft of this work and providing helpful comments. B.L. was supported by the US National Institutes of Health/National Institute of General Medical Sciences grant 1R01GM118568.
Publisher Copyright:
© 2018 Macmillan Publishers Limited, part of Springer Nature. All rights reserved.
PY - 2018/4/1
Y1 - 2018/4/1
N2 - Next-generation sequencing has made major strides in the past decade. Studies based on large sequencing data sets are growing in number, and public archives for raw sequencing data have been doubling in size every 18 months. Leveraging these data requires researchers to use large-scale computational resources. Cloud computing, a model whereby users rent computers and storage from large data centres, is a solution that is gaining traction in genomics research. Here, we describe how cloud computing is used in genomics for research and large-scale collaborations, and argue that its elasticity, reproducibility and privacy features make it ideally suited for the large-scale reanalysis of publicly available archived data, including privacy-protected data.
AB - Next-generation sequencing has made major strides in the past decade. Studies based on large sequencing data sets are growing in number, and public archives for raw sequencing data have been doubling in size every 18 months. Leveraging these data requires researchers to use large-scale computational resources. Cloud computing, a model whereby users rent computers and storage from large data centres, is a solution that is gaining traction in genomics research. Here, we describe how cloud computing is used in genomics for research and large-scale collaborations, and argue that its elasticity, reproducibility and privacy features make it ideally suited for the large-scale reanalysis of publicly available archived data, including privacy-protected data.
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U2 - 10.1038/nrg.2017.113
DO - 10.1038/nrg.2017.113
M3 - Review article
C2 - 29379135
AN - SCOPUS:85044393998
SN - 1471-0056
VL - 19
SP - 208
EP - 219
JO - Nature Reviews Genetics
JF - Nature Reviews Genetics
IS - 4
ER -