Contrastive Self-Supervised Learning for Spatio-Temporal Analysis of Lung Ultrasound Videos

Li Chen, Jonathan Rubin, Jiahong Ouyang, Naveen Balaraju, Shubham Patil, Courosh Mehanian, Sourabh Kulhare, Rachel Millin, Kenton W. Gregory, Cynthia R. Gregory, Meihua Zhu, David O. Kessler, Laurie Malia, Almaz Dessie, Joni Rabiner, Di Coneybeare, Bo Shopsin, Andrew Hersh, Cristian Madar, Jeffrey ShuppLaura S. Johnson, Jacob Avila, Kristin Dwyer, Peter Weimersheimer, Balasundar Raju, Jochen Kruecker, Alvin Chen

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Abstract

Self-supervised learning (SSL) methods have shown promise for medical imaging applications by learning meaningful visual representations, even when the amount of labeled data is limited. Here, we extend state-of-the-art contrastive learning SSL methods to 2D+time medical ultrasound video data by introducing a modified encoder and augmentation method capable of learning meaningful spatio-temporal representations, without requiring constraints on the input data. We evaluate our method on the challenging clinical task of identifying lung consolidations (an important pathological feature) in ultrasound videos. Using a multi-center dataset of over 27k lung ultrasound videos acquired from over 500 patients, we show that our method can significantly improve performance on downstream localization and classification of lung consolidation. Comparisons against baseline models trained without SSL show that the proposed methods are particularly advantageous when the size of labeled training data is limited (e.g., as little as 5% of the training set).

Original languageEnglish (US)
Title of host publication2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023
PublisherIEEE Computer Society
ISBN (Electronic)9781665473583
DOIs
StatePublished - 2023
Event20th IEEE International Symposium on Biomedical Imaging, ISBI 2023 - Cartagena, Colombia
Duration: Apr 18 2023Apr 21 2023

Publication series

NameProceedings - International Symposium on Biomedical Imaging
Volume2023-April
ISSN (Print)1945-7928
ISSN (Electronic)1945-8452

Conference

Conference20th IEEE International Symposium on Biomedical Imaging, ISBI 2023
Country/TerritoryColombia
CityCartagena
Period4/18/234/21/23

Keywords

  • Self-supervised learning
  • contrastive learning
  • lung ultrasound
  • spatio-temporal augmentation

ASJC Scopus subject areas

  • Biomedical Engineering
  • Radiology Nuclear Medicine and imaging

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