FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

Daniel J.B. Clarke; Lily Wang; Alex Jones; Megan L. Wojciechowicz; Denis Torre; Kathleen M. Jagodnik; Sherry L. Jenkins; Peter McQuilton; Zachary Flamholz; Moshe C. Silverstein; Brian M. Schilder; Kimberly Robasky; Claris Castillo; Ray Idaszak; Stanley C. Ahalt; Jason Williams; Stephan Schurer; Daniel J. Cooper; Ricardo de Miranda Azevedo; Juergen A. Klenk; Melissa A. Haendel; Jared Nedzel; Paul Avillach; Mary E. Shimoyama; Rayna M. Harris; Meredith Gamble; Rudy Poten; Amanda L. Charbonneau; Jennie Larkin; C. Titus Brown; Vivien R. Bonazzi; Michel J. Dumontier; Susanna Assunta Sansone; Avi Ma'ayan

doi:10.1016/j.cels.2019.09.011

FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

Daniel J.B. Clarke, Lily Wang, Alex Jones, Megan L. Wojciechowicz, Denis Torre, Kathleen M. Jagodnik, Sherry L. Jenkins, Peter McQuilton, Zachary Flamholz, Moshe C. Silverstein, Brian M. Schilder, Kimberly Robasky, Claris Castillo, Ray Idaszak, Stanley C. Ahalt, Jason Williams, Stephan Schurer, Daniel J. Cooper, Ricardo de Miranda Azevedo, Juergen A. KlenkMelissa A. Haendel, Jared Nedzel, Paul Avillach, Mary E. Shimoyama, Rayna M. Harris, Meredith Gamble, Rudy Poten, Amanda L. Charbonneau, Jennie Larkin, C. Titus Brown, Vivien R. Bonazzi, Michel J. Dumontier, Susanna Assunta Sansone, Avi Ma'ayan

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Research output: Contribution to journal › Comment/debate › peer-review

23 Scopus citations

Abstract

As more digital resources are produced by the research community, it is becoming increasingly important to harmonize and organize them for synergistic utilization. The findable, accessible, interoperable, and reusable (FAIR) guiding principles have prompted many stakeholders to consider strategies for tackling this challenge. The FAIRshake toolkit was developed to enable the establishment of community-driven FAIR metrics and rubrics paired with manual and automated FAIR assessments. FAIR assessments are visualized as an insignia that can be embedded within digital-resources-hosting websites. Using FAIRshake, a variety of biomedical digital resources were manually and automatically evaluated for their level of FAIRness.

Original language	English (US)
Pages (from-to)	417-421
Number of pages	5
Journal	Cell Systems
Volume	9
Issue number	5
DOIs	https://doi.org/10.1016/j.cels.2019.09.011
State	Published - Nov 27 2019

ASJC Scopus subject areas

Pathology and Forensic Medicine
Histology
Cell Biology

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Clarke, D. J. B., Wang, L., Jones, A., Wojciechowicz, M. L., Torre, D., Jagodnik, K. M., Jenkins, S. L., McQuilton, P., Flamholz, Z., Silverstein, M. C., Schilder, B. M., Robasky, K., Castillo, C., Idaszak, R., Ahalt, S. C., Williams, J., Schurer, S., Cooper, D. J., de Miranda Azevedo, R., ... Ma'ayan, A. (2019). FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. Cell Systems, 9(5), 417-421. https://doi.org/10.1016/j.cels.2019.09.011

Clarke, DJB, Wang, L, Jones, A, Wojciechowicz, ML, Torre, D, Jagodnik, KM, Jenkins, SL, McQuilton, P, Flamholz, Z, Silverstein, MC, Schilder, BM, Robasky, K, Castillo, C, Idaszak, R, Ahalt, SC, Williams, J, Schurer, S, Cooper, DJ, de Miranda Azevedo, R, Klenk, JA, Haendel, MA, Nedzel, J, Avillach, P, Shimoyama, ME, Harris, RM, Gamble, M, Poten, R, Charbonneau, AL, Larkin, J, Brown, CT, Bonazzi, VR, Dumontier, MJ, Sansone, SA & Ma'ayan, A 2019, 'FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources', Cell Systems, vol. 9, no. 5, pp. 417-421. https://doi.org/10.1016/j.cels.2019.09.011

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title = "FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources",

abstract = "As more digital resources are produced by the research community, it is becoming increasingly important to harmonize and organize them for synergistic utilization. The findable, accessible, interoperable, and reusable (FAIR) guiding principles have prompted many stakeholders to consider strategies for tackling this challenge. The FAIRshake toolkit was developed to enable the establishment of community-driven FAIR metrics and rubrics paired with manual and automated FAIR assessments. FAIR assessments are visualized as an insignia that can be embedded within digital-resources-hosting websites. Using FAIRshake, a variety of biomedical digital resources were manually and automatically evaluated for their level of FAIRness.",

author = "Clarke, {Daniel J.B.} and Lily Wang and Alex Jones and Wojciechowicz, {Megan L.} and Denis Torre and Jagodnik, {Kathleen M.} and Jenkins, {Sherry L.} and Peter McQuilton and Zachary Flamholz and Silverstein, {Moshe C.} and Schilder, {Brian M.} and Kimberly Robasky and Claris Castillo and Ray Idaszak and Ahalt, {Stanley C.} and Jason Williams and Stephan Schurer and Cooper, {Daniel J.} and {de Miranda Azevedo}, Ricardo and Klenk, {Juergen A.} and Haendel, {Melissa A.} and Jared Nedzel and Paul Avillach and Shimoyama, {Mary E.} and Harris, {Rayna M.} and Meredith Gamble and Rudy Poten and Charbonneau, {Amanda L.} and Jennie Larkin and Brown, {C. Titus} and Bonazzi, {Vivien R.} and Dumontier, {Michel J.} and Sansone, {Susanna Assunta} and Avi Ma'ayan",

note = "Funding Information: This work was partially supported by the National Institutes of Health , United States, grant numbers OT3-OD025467 , OT3-OD025459 , and U54-HL127624 . Publisher Copyright: {\textcopyright} 2019 Elsevier Inc.",

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doi = "10.1016/j.cels.2019.09.011",

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AU - Torre, Denis

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AU - Jenkins, Sherry L.

AU - McQuilton, Peter

AU - Flamholz, Zachary

AU - Silverstein, Moshe C.

AU - Schilder, Brian M.

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AU - Castillo, Claris

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AU - Ahalt, Stanley C.

AU - Williams, Jason

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AU - de Miranda Azevedo, Ricardo

AU - Klenk, Juergen A.

AU - Haendel, Melissa A.

AU - Nedzel, Jared

AU - Avillach, Paul

AU - Shimoyama, Mary E.

AU - Harris, Rayna M.

AU - Gamble, Meredith

AU - Poten, Rudy

AU - Charbonneau, Amanda L.

AU - Larkin, Jennie

AU - Brown, C. Titus

AU - Bonazzi, Vivien R.

AU - Dumontier, Michel J.

AU - Sansone, Susanna Assunta

AU - Ma'ayan, Avi

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FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources

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ASJC Scopus subject areas

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