Abstract
Before squamous cell lung cancer develops, precancerous lesions can be found in the airways. From longitudinal monitoring, we know that only half of such lesions become cancer, whereas a third spontaneously regress. Although recent studies have described the presence of an active immune response in high-grade lesions, the mechanisms underpinning clinical regression of precancerous lesions remain unknown. Here, we show that host immune surveillance is strongly implicated in lesion regression. Using bronchoscopic biopsies from human subjects, we find that regressive carcinoma in situ lesions harbor more infiltrating immune cells than those that progress to cancer. Moreover, molecular profiling of these lesions identifies potential immune escape mechanisms specifically in those that progress to cancer: antigen presentation is impaired by genomic and epigenetic changes, CCL27–CCR10 signaling is upregulated, and the immunomodulator TNFSF9 is downregulated. Changes appear intrinsic to the carcinoma in situ lesions, as the adjacent stroma of progressive and regressive lesions are transcriptomically similar. SIGnIFICAnCE: Immune evasion is a hallmark of cancer. For the first time, this study identifies mechanisms by which precancerous lesions evade immune detection during the earliest stages of carcino-genesis and forms a basis for new therapeutic strategies that treat or prevent early-stage lung cancer.
Original language | English (US) |
---|---|
Pages (from-to) | 1489-1499 |
Number of pages | 11 |
Journal | Cancer discovery |
Volume | 10 |
Issue number | 10 |
DOIs | |
State | Published - Oct 2020 |
ASJC Scopus subject areas
- Oncology
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In: Cancer discovery, Vol. 10, No. 10, 10.2020, p. 1489-1499.
Research output: Contribution to journal › Article › peer-review
}
TY - JOUR
T1 - Immune surveillance in clinical regression of preinvasive squamous cell lung cancer
AU - Pennycuick, Adam
AU - Teixeira, Vitor H.
AU - Abduljabbar, Khalid
AU - Ahmed Raza, Shan E.
AU - Lund, Tom
AU - Akarca, Ayse U.
AU - Rosenthal, Rachel
AU - Kalinke, Lukas
AU - Chandrasekharan, Deepak P.
AU - Pipinikas, Christodoulos P.
AU - Lee-Six, Henry
AU - Hynds, Robert E.
AU - Gowers, Kate H.C.
AU - Henry, Jake Y.
AU - Millar, Fraser R.
AU - Hagos, Yeman B.
AU - Denais, Celine
AU - Falzon, Mary
AU - Moore, David A.
AU - Antoniou, Sophia
AU - Durrenberger, Pascal F.
AU - Furness, Andrew J.
AU - Carroll, Bernadette
AU - Marceaux, Claire
AU - Asselin-Labat, Marie Liesse
AU - Larson, William
AU - Betts, Courtney
AU - Coussens, Lisa M.
AU - Thakrar, Ricky M.
AU - George, Jeremy
AU - Swanton, Charles
AU - Thirlwell, Christina
AU - Campbell, Peter J.
AU - Marafioti, Teresa
AU - Yuan, Yinyin
AU - Quezada, Sergio A.
AU - McGranahan, Nicholas
AU - Janes, Sam M.
N1 - Funding Information: We thank all of the patients who participated in this study. We thank P. Rabbitts, A. Banerjee, and C. Read for their early development of the study. The results published here are in part based on data generated by a TCGA pilot project established by the NCI and National Human Genome Research Institute. Information about TCGA and the investiga-tors and institutions that constitute the TCGA research network can be found at http://cancergenome.nih.gov. R.E. Hynds, N. McGranahan, P.J. Campbell, and S.M. Janes are supported by Wellcome Trust fellowships. S.M. Janes is also supported by the Rosetrees Trust, the Welton Trust, the Garfield Weston Trust, the Stoneygate Trust and UCLH Charitable Foundation, as well as Stand Up To Cancer-LUNGevity-American Lung Association Lung Cancer Interception Dream Team Translational Cancer Research Grant (grant number: SU2C-AACR-DT23-17). Stand Up To Cancer (SU2C) is a division of the Entertainment Industry Foundation. The research grant is administered by the American Association for Cancer Research, the scientific partner of SU2C. V.H. Teixeira, C.P. Pipinikas, R.E. Hynds, and S.M. Janes have been funded by the Roy Castle Lung Cancer Foundation. A. Pennycuick and D.P. Chandrasekharan are funded by Wellcome Trust clinical PhD training fellowships. H. Lee-Six is funded by the Wellcome Trust Sanger Institute nonclinical PhD studentship. C. Thirlwell was a CRUK Clinician Scientist. This work was partially undertaken at UCLH/UCL, who received a propor-tion of funding from the Department of Health?s NIHR Biomedical Research Centre?s funding scheme (to S.M. Janes). R.E. Hynds, D.A. Moore, N. McGranahan, C. Swanton, and S.M. Janes are part of the CRUK Lung Cancer Centre of Excellence. C. Swanton is Royal Society Napier Research Professor. His work is supported by the Francis Crick Institute, which receives its core funding from Cancer Research UK (FC001169), the UK Medical Research Council (FC001169), and the Wellcome Trust (FC001169). C. Swanton is funded by Cancer Research UK (TRACERx, PEACE and CRUK Cancer Immunotherapy Catalyst Network), Cancer Research UK Lung Cancer Centre of Excellence, the Rosetrees Trust, Butterfield and Stoneygate Trusts, NovoNordisk Foundation (ID16584), Royal Society Research Professorship Enhancement Award (RP/EA/180007), the NIHR BRC at University College London Hospitals, the CRUK-UCL Centre, Experimental Cancer Medicine Centre and the Breast Cancer Research Foundation (BCRF). This research is supported by a Stand Up To Cancer-LUNGevity-American Lung Association Lung Cancer Interception Dream Team Translational Research Grant (SU2C-AACR-DT23-17). Stand Up To Cancer is a program of the Entertainment Industry Foundation. Research grants are administered by the American Association for Cancer Research, the Scientific Partner of SU2C. C. Swanton also receives funding from the European Research Council (ERC) under the European Union?s Seventh Framework Programme (FP7/2007-2013) Consolidator Grant (FP7-THESEUS-617844), European Commission ITN (FP7-PloidyNet 607722), an ERC Advanced Grant (PROTEUS) from the European Research Council under the European Union?s Horizon 2020 research and innovation programme (835297), and Chromavision from the European Union?s Horizon 2020 research and innovation programme (665233). Y. Yuan acknowledges funding from Cancer Research UK Career Establishment Award, Breast Cancer, Children?s Cancer and Leukaemia Group, NIH U54 CA217376 and R01 CA185138, CDMRP Breast Cancer Research Program Award, CRUK Brain Cancer Award (TARGET-GBM), European Commission ITN, Wellcome Trust, and The Royal Marsden/ICR National Institute of Health Research Biomedical Research Centre. S.A. Quezada is funded by a CRUK Senior Cancer Research Fellowship, a CRUK Biotherapeutic Program Grant, the Cancer Immunotherapy Accelerator Award (CITA-CRUK), and the Rosetrees Trust. L.M. Coussens acknowledges funding from the NIH (1U01 CA224012, U2C CA233280, R01 CA223150, R01, R01 CA226909, R21 HD099367), the Knight Cancer Institute, and the Brenden-Colson Center for Pancreatic Care at OHSU. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Funding Information: We thank all of the patients who participated in this study. We thank P. Rabbitts, A. Banerjee, and C. Read for their early development of the study. The results published here are in part based on data generated by a TCGA pilot project established by the NCI and National Human Genome Research Institute. Information about TCGA and the investigators and institutions that constitute the TCGA research network can be found at http://cancergenome.nih.gov. R.E. Hynds, N. McGranahan, P.J. Campbell, and S.M. Janes are supported by Wellcome Trust fellowships. S.M. Janes is also supported by the Rosetrees Trust, the Welton Trust, the Garfield Weston Trust, the Stoneygate Trust and UCLH Charitable Foundation, as well as Stand Up To Cancer-LUNGevity-American Lung Association Lung Cancer Interception Dream Team Translational Cancer Research Grant (grant number: SU2C-AACR-DT23-17). Stand Up To Cancer (SU2C) is a division of the Entertainment Industry Foundation. The research grant is administered by the American Association for Cancer Research, the scientific partner of SU2C. V.H. Teixeira, C.P. Pipinikas, R.E. Hynds, and S.M. Janes have been funded by the Roy Castle Lung Cancer Foundation. A. Pennycuick and D.P. Chandrasekharan are funded by Wellcome Trust clinical PhD training fellowships. H. Lee-Six is funded by the Wellcome Trust Sanger Institute nonclinical PhD studentship. C. Thirlwell was a CRUK Clinician Scientist. This work was partially undertaken at UCLH/UCL, who received a proportion of funding from the Department of Health’s NIHR Biomedical Research Centre’s funding scheme (to S.M. Janes). R.E. Hynds, D.A. Moore, N. McGranahan, C. Swanton, and S.M. Janes are part of the CRUK Lung Cancer Centre of Excellence. C. Swanton is Royal Society Napier Research Professor. His work is supported by the Francis Crick Institute, which receives its core funding from Cancer Research UK (FC001169), the UK Medical Research Council (FC001169), and the Wellcome Trust (FC001169). C. Swanton is funded by Cancer Research UK (TRACERx, PEACE and CRUK Cancer Immunotherapy Catalyst Network), Cancer Research UK Lung Cancer Centre of Excellence, the Rosetrees Trust, Butterfield and Stoneygate Trusts, NovoNordisk Foundation (ID16584), Royal Society Research Professorship Enhancement Award (RP/EA/180007), the NIHR BRC at University College London Hospitals, the CRUK-UCL Centre, Experimental Cancer Medicine Centre and the Breast Cancer Research Foundation (BCRF). This research is supported by a Stand Up To Cancer-LUNGevity-American Lung Association Lung Cancer Interception Dream Team Translational Research Grant (SU2C-AACR-DT23-17). Stand Up To Cancer is a program of the Entertainment Industry Foundation. Research grants are administered by the American Association for Cancer Research, the Scientific Partner of SU2C. C. Swanton also receives funding from the European Research Council (ERC) under the European Union’s Seventh Framework Programme (FP7/2007-2013) Consolidator Grant (FP7-THESEUS-617844), European Commission ITN (FP7-PloidyNet 607722), an ERC Advanced Grant (PROTEUS) from the European Research Council under the European Union’s Horizon 2020 research and innovation programme (835297), and Chromavision from the European Union’s Horizon 2020 research and innovation programme (665233). Y. Yuan acknowledges funding from Cancer Research UK Career Establishment Award, Breast Cancer, Children’s Cancer and Leukaemia Group, NIH U54 CA217376 and R01 CA185138, CDMRP Breast Cancer Research Program Award, CRUK Brain Cancer Award (TARGET-GBM), European Commission ITN, Wellcome Trust, and The Royal Marsden/ICR National Institute of Health Research Biomedical Research Centre. S.A. Quezada is funded by a CRUK Senior Cancer Research Fellowship, a CRUK Biotherapeutic Program Grant, the Cancer Immunotherapy Accelerator Award (CITA-CRUK), and the Rosetrees Trust. L.M. Coussens acknowledges funding from the NIH (1U01 CA224012, U2C CA233280, R01 CA223150, R01, R01 CA226909, R21 HD099367), the Knight Cancer Institute, and the Brenden-Colson Center for Pancreatic Care at OHSU. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Publisher Copyright: © 2020 American Association for Cancer Research.
PY - 2020/10
Y1 - 2020/10
N2 - Before squamous cell lung cancer develops, precancerous lesions can be found in the airways. From longitudinal monitoring, we know that only half of such lesions become cancer, whereas a third spontaneously regress. Although recent studies have described the presence of an active immune response in high-grade lesions, the mechanisms underpinning clinical regression of precancerous lesions remain unknown. Here, we show that host immune surveillance is strongly implicated in lesion regression. Using bronchoscopic biopsies from human subjects, we find that regressive carcinoma in situ lesions harbor more infiltrating immune cells than those that progress to cancer. Moreover, molecular profiling of these lesions identifies potential immune escape mechanisms specifically in those that progress to cancer: antigen presentation is impaired by genomic and epigenetic changes, CCL27–CCR10 signaling is upregulated, and the immunomodulator TNFSF9 is downregulated. Changes appear intrinsic to the carcinoma in situ lesions, as the adjacent stroma of progressive and regressive lesions are transcriptomically similar. SIGnIFICAnCE: Immune evasion is a hallmark of cancer. For the first time, this study identifies mechanisms by which precancerous lesions evade immune detection during the earliest stages of carcino-genesis and forms a basis for new therapeutic strategies that treat or prevent early-stage lung cancer.
AB - Before squamous cell lung cancer develops, precancerous lesions can be found in the airways. From longitudinal monitoring, we know that only half of such lesions become cancer, whereas a third spontaneously regress. Although recent studies have described the presence of an active immune response in high-grade lesions, the mechanisms underpinning clinical regression of precancerous lesions remain unknown. Here, we show that host immune surveillance is strongly implicated in lesion regression. Using bronchoscopic biopsies from human subjects, we find that regressive carcinoma in situ lesions harbor more infiltrating immune cells than those that progress to cancer. Moreover, molecular profiling of these lesions identifies potential immune escape mechanisms specifically in those that progress to cancer: antigen presentation is impaired by genomic and epigenetic changes, CCL27–CCR10 signaling is upregulated, and the immunomodulator TNFSF9 is downregulated. Changes appear intrinsic to the carcinoma in situ lesions, as the adjacent stroma of progressive and regressive lesions are transcriptomically similar. SIGnIFICAnCE: Immune evasion is a hallmark of cancer. For the first time, this study identifies mechanisms by which precancerous lesions evade immune detection during the earliest stages of carcino-genesis and forms a basis for new therapeutic strategies that treat or prevent early-stage lung cancer.
UR - http://www.scopus.com/inward/record.url?scp=85097172451&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85097172451&partnerID=8YFLogxK
U2 - 10.1158/2159-8290.CD-19-1366
DO - 10.1158/2159-8290.CD-19-1366
M3 - Article
C2 - 32690541
AN - SCOPUS:85097172451
SN - 2159-8274
VL - 10
SP - 1489
EP - 1499
JO - Cancer Discovery
JF - Cancer Discovery
IS - 10
ER -