Oregon Health and Sciences University

Research output

Research output per year 1950 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024

• 46288 Article
• 6366 Review article
• 2403 Comment/debate
• 2080 Letter
• 6214 More
  • 2006 Chapter
  • 1576 Editorial
  • 1542 Short survey
  • 695 Conference contribution
  • 205 Conference article
  • 68 Paper
  • 66 Book
  • 56 Foreword/postscript

Research output per year

Research output per year

Search results

• 2023

  Computational Analysis of Backchannel Usage and Overlap Length in Autistic Children

  Lawley, G. O., Heeman, P. A. & Bedrick, S., 2023, p. 17-23. 7 p.

  Research output: Contribution to conference › Paper › peer-review

  • Child Language 100%
  • Child 96%
• 2022

  Efficient Self-Ensemble for Semantic Segmentation

  Bousselham, W., Thibault, G., Pagano, L., Machireddy, A., Gray, J., Chang, Y. H. & Song, X., 2022.

  Research output: Contribution to conference › Paper › peer-review

  • Agglomeration 31%
  • Costs 13%
  1 Scopus citations
• 2020

  Nonlinear discriminant feature extraction for robust text-independent speaker recognition

  Konig, Y., Heck, L., Weintraub, M. & Sonmez, K., 2020, p. 72-75. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • Discriminant analysis 100%
  • Multilayers 90%
  • Feature extraction 71%
  • Testing 48%
  • Acoustics 38%
  3 Scopus citations

• Overview of the TREC 2020 Precision Medicine Track

  Roberts, K., Demner-Fushman, D., Voorhees, E. M., Bedrick, S. & Hersh, W. R., 2020.

  Research output: Contribution to conference › Paper › peer-review
  11 Scopus citations

• Spatial transformer spectral kernels for deformable image registration

  Safadi, E. A. & Song, X., 2020.

  Research output: Contribution to conference › Paper › peer-review

  • Image registration 100%
  • Interpolation 50%
  • Hilbert spaces 39%
  • Pixels 22%
• 2019

  Abstract I16: KRAS and environmental signals regulate MYC to drive lineage plasticity, pancreas cancer progression, and therapeutic resistance

  Langer, E., Su, Y., Joly, M., Allen-Petersen, B., Farrell, A., Worth, P., Liefwalker, D., Link, J., Sheppard, B. & Sears, R., Dec 15 2019.

  Research output: Contribution to conference › Paper › peer-review

  • Pancreatic Neoplasms 100%
  • Adenocarcinoma 82%
  • Cell Plasticity 60%
  • Cancer-Associated Fibroblasts 42%
  • Neoplasms 34%

• Overview of the TREC 2019 Precision Medicine Track

  Roberts, K., Demner-Fushman, D., Voorhees, E. M., Hersh, W. R., Bedrick, S., Lazar, A. J., Pant, S. & Meric-Bernstam, F., 2019.

  Research output: Contribution to conference › Paper › peer-review
  35 Scopus citations
• 2018

  Overview of the TREC 2018 Precision Medicine Track

  Roberts, K., Demner-Fushman, D., Voorhees, E. M., Hersh, W. R., Bedrick, S. & Lazar, A. J., 2018.

  Research output: Contribution to conference › Paper › peer-review
  45 Scopus citations
• 2017

  Overview of the TREC 2017 Precision Medicine Track

  Roberts, K., Demner-Fushman, D., Voorhees, E. M., Hersh, W. R., Bedrick, S., Lazar, A. J. & Pant, S., 2017.

  Research output: Contribution to conference › Paper › peer-review
  71 Scopus citations
• 2016

  Overview of the TREC 2016 Clinical Decision Support Track

  Roberts, K., Demner-Fushman, D., Voorhees, E. M. & Hersh, W. R., 2016.

  Research output: Contribution to conference › Paper › peer-review
  53 Scopus citations
• 2015

  Overview of the TREC 2015 Clinical Decision Support Track

  Roberts, K., Simpson, M. S., Voorhees, E. & Hersh, W. R., 2015.

  Research output: Contribution to conference › Paper › peer-review
  80 Scopus citations
• 2014

  Overview of the TREC 2014 Clinical Decision Support Track

  Simpson, M. S., Voorhees, E. M. & Hersh, W., 2014.

  Research output: Contribution to conference › Paper › peer-review
  73 Scopus citations
• 2012

  Identifying Patients for Clinical Studies from Electronic Health Records: TREC 2012 Medical Records Track at OHSU

  Bedrick, S., Edinger, T., Cohen, A. & Hersh, W., 2012.

  Research output: Contribution to conference › Paper › peer-review

  • Health 100%
  • Derivatives 55%
  6 Scopus citations

• Overview of the TREC 2012 Medical Records Track

  Voorhees, E. M. & Hersh, W., 2012.

  Research output: Contribution to conference › Paper › peer-review

  • Health 100%
  92 Scopus citations
• 2010

  Autism and the use of fillers: Differences between ‘um’ and ‘uh’

  Lunsford, R., Heeman, P. A., Black, L. & Van Santen, J., 2010, p. 107-110. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • Fillers 100%
  8 Scopus citations

• Scanning methods and language modeling for binary switch typing

  Roark, B., De Villiers, J., Gibbons, C. & Fried-Oken, M., 2010, p. 28-36. 9 p.

  Research output: Contribution to conference › Paper › peer-review

  • Language Modeling 100%
  • Grid 79%
  • Language Model 61%
  • Scanning 55%
  • Switches 51%
  30 Scopus citations

• Using reinforcement learning to create communication channel management strategies for diverse users

  Lunsford, R. & Heeman, P., 2010, p. 53-61. 9 p.

  Research output: Contribution to conference › Paper › peer-review

  • Reinforcement Learning 100%
  • Reinforcement learning 63%
  • reinforcement 61%
  • Communication 40%
  • communication 34%
• 2008

  An anticorrelation kernel for improved system combination in speaker verification

  Ferrer, L., Sönmez, K. & Shriberg, E., Jan 1 2008.

  Research output: Contribution to conference › Paper › peer-review
  3 Scopus citations

• Rapid image analysis using neural signals

  Mathan, S., Erdogmus, D., Huang, Y., Pavel, M., Ververs, P., Carciofini, J., Dorneich, M. & Whitlow, S., 2008, p. 3309-3314. 6 p.

  Research output: Contribution to conference › Paper › peer-review

  • Image analysis 100%
  • Sensors 26%
  27 Scopus citations
• 2007

  Avoiding and resolving initiative conflicts in dialogue

  Yang, F. & Heeman, P. A., 2007, p. 17-24. 8 p.

  Research output: Contribution to conference › Paper › peer-review

  • dialogue 100%
  • Task-oriented Dialogue 61%
  • Empirical Study 35%
  • conversation 26%
  • linguistics 22%
  4 Scopus citations

• Combining reinforcement learning with information-state update rules

  Heeman, P. A., 2007, p. 268-275. 8 p.

  Research output: Contribution to conference › Paper › peer-review

  • Reinforcement Learning 100%
  • reinforcement 61%
  • dialogue 45%
  • learning 21%
  • simulation 16%
  30 Scopus citations

• Vision-only navigation and control of unmanned aerial vehicles using the sigma-point Kalman filter

  Bai, H., Wan, E., Song, X., Myronenko, A. & Bogdanov, A., 2007, p. 1264-1275. 12 p.

  Research output: Contribution to conference › Paper › peer-review

  • Helicopters 100%
  • Unmanned aerial vehicles (UAV) 93%
  • Kalman filters 92%
  • Navigation 76%
  • Global positioning system 43%
  3 Scopus citations
• 2005

  Comparison of phase-coupling indices for tremor

  Kim, S., McNames, J. & Burchiel, K., 2005, p. 348-351. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • Neurosurgery 100%
  • Microelectrodes 91%
  • Accelerometers 65%
  • Neurons 63%
  • Brain 57%
  1 Scopus citations

• Conventions in human-human multi-threaded dialogues: A preliminary study

  Heeman, P. A., Yang, F., Kun, A. L. & Shyrokov, A., 2005, p. 293-295. 3 p.

  Research output: Contribution to conference › Paper › peer-review

  • Switches 100%
  12 Scopus citations

• DialogueView: an Annotation Tool for Dialogue

  Yang, F. & Heeman, P. A., 2005, p. 20-21. 2 p.

  Research output: Contribution to conference › Paper › peer-review

• DialogueView: An annotation tool for dialogue

  Yang, F. & Heeman, P. A., 2005, p. 20-21. 2 p.

  Research output: Contribution to conference › Paper › peer-review
  2 Scopus citations

• Estimation of the acoustic properties of the nasal tract during the production of nasalized vowels

  Niu, X., Kain, A. & Van Santen, J. P. H., 2005, p. 1045-1048. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • Acoustic properties 100%
  • Microphones 71%
  • Source separation 29%
  • Speech enhancement 28%
  • Speech recognition 21%
  2 Scopus citations

• Learning mixed initiative dialog strategies by using reinforcement learning on both conversants

  English, M. S. & Heeman, P. A., 2005, p. 1011-1018. 8 p.

  Research output: Contribution to conference › Paper › peer-review

  Open Access

  • Reinforcement Learning 100%
  • Dialogue 93%
  • Reinforcement learning 66%
  • Policy 65%
  • Learning 60%
  29 Scopus citations

• Unsupervised gene/protein named entity normalization using automatically extracted dictionaries

  Cohen, A. M., 2005, p. 17-24. 8 p.

  Research output: Contribution to conference › Paper › peer-review

  • Glossaries 100%
  • Genes 99%
  • Proteins 95%
  • Psychology Recognition 91%
  • Protein 42%
  48 Scopus citations
• 2004

  Analysis of the stratification in the Guadiana estuary

  Pinto, L., Oliveira, A., Fortunato, A. B. & Baptista, A. M., 2004, p. 1094-1113. 20 p.

  Research output: Contribution to conference › Paper › peer-review

  • Estuaries 100%
  • Stratification 72%
  • stratification 56%
  • Rivers 53%
  • estuary 51%
  4 Scopus citations

• Towards understanding mixed-initiative in task-oriented dialogues

  Yang, F., Heeman, P. A. & Hollingshead, K., 2004, p. 217-220. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • Task-oriented Dialogue 100%
  • dialogue 40%
  • conversation 21%
  • discourse 15%
  • evidence 11%
  3 Scopus citations

• Using computer simulation to compare two models of mixed-initiative

  Yang, F. & Heeman, P. A., 2004, p. 213-216. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • computer simulation 100%
  • Computer Simulation 95%
  • dialogue 41%
  • communication 15%
  • Empirical Study 12%
  4 Scopus citations
• 2003

  Acoustically verifying speech repair annotations

  Yang, F., Heeman, P. A. & Strayer, S. E., 2003, p. 97-100. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • Repair 100%

• An Automated Method for Neuronal Spike Source Identification

  Santiago, R. A., McNames, J., Burchiel, K. & Lendaris, G. G., 2003, p. 2837-2842. 6 p.

  Research output: Contribution to conference › Paper › peer-review

  • Brain 100%
  • Sampling 56%
  • Microelectrodes 53%
  • Ablation 49%
  • Neurons 37%

• Control and prediction of the impact of pitch modification on synthetic speech quality

  Klabbers, E. & Van Santen, J. P. H., 2003, p. 317-320. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • Degradation 100%
  • Prediction 80%
  • Speech Synthesis 73%
  • Pitch Contour 71%
  • Speech synthesis 59%
  8 Scopus citations

• Control in task-oriented dialogues

  Heeman, P. A., Yang, F. & Strayer, S. E., 2003, p. 209-212. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • Task-oriented Dialogue 100%
  • dialogue 40%
  • Dialogue Systems 21%
  • Discourse Structure 18%
  • discourse 15%
  6 Scopus citations

• Neural net based processor for robust, high-integrity multisensor and synthetic vision fusion

  Kerr, J. R., Luk, C. H., Hammerstrom, D. & Pavel, M., 2003, p. 9.D.4/1-9.D.4/12.

  Research output: Contribution to conference › Paper › peer-review

  • Fusion reactions 100%
  • Neural networks 75%
  • Monitoring 70%
  • Testing 32%
  • Sensors 31%
  3 Scopus citations

• Robust Recognition Based on Adaptive Combination of Weak Classifiers

  Wang, G., Pavel, M. & Song, X., 2003, p. 2272-2276. 5 p.

  Research output: Contribution to conference › Paper › peer-review

  • Classifiers 100%
  • Pattern recognition 24%
  2 Scopus citations

• Visualizing Spatial and Temporal Variability in Coastal Observatories

  Jiménez, W. H., Corrêa, W. T., Silva, C. T. & Baptista, A. M., 2003, p. 569-574. 6 p.

  Research output: Contribution to conference › Paper › peer-review

  • Observatories 100%
  • Visualization 61%
  • Rivers 39%
  • Natural resources management 34%
  • Estuaries 30%
  2 Scopus citations
• 2002

  ACT: A graphical dialogue annotation comparison tool

  Yang, F., Strayer, S. E. & Heeman, P. A., 2002, p. 1553-1556. 4 p.

  Research output: Contribution to conference › Paper › peer-review

  • Annotation 100%
  • dialogue 69%
  • Utterance 42%
  • segmentation 35%
  • visualization 30%
  4 Scopus citations

• Analysis of bovine neurofilament-M by MALDI-TOF and ESI-MS/MS

  Mixon, A. E., Kim, M. Y., Deinzer, M. L. & Spencer, P., 2002, p. 291-292. 2 p.

  Research output: Contribution to conference › Paper › peer-review

  • Matrix Assisted Laser Desorption Ionization - Time of Flight (MALDI-TOF) 100%
  • Electrospray Ionization Mass Spectroscopy 89%
  • Threonine 49%
  • Serine 41%
  • Rod Like Crystal 40%

• Bioinformatics and digital libraries

  Hersh, W. & Dubay, C., 2002, p. 421. 1 p.

  Research output: Contribution to conference › Paper › peer-review

• DialogueView: An annotation tool for dialogue

  Heeman, P. A., Yang, F. & Strayer, S. E., 2002, p. 50-59. 10 p.

  Research output: Contribution to conference › Paper › peer-review

  • Dialogue 100%
  • Annotation 98%
  • Discourse 64%
  • Speech 62%
  • Speech coding 46%
  10 Scopus citations

• Overcoming impediments to effective health and biomedical digital libraries

  Hersh, W., 2002, p. 360. 1 p.

  Research output: Contribution to conference › Paper › peer-review

  • Digital libraries 100%
  • Health 60%
  • biomedicine 49%
  • health 37%

• Text retrieval conference (TREC) genomics pre-track workshop

  Hersh, W., 2002, p. 428. 1 p.

  Research output: Contribution to conference › Paper › peer-review

  • Genomics 100%
  • small group 42%
  • evaluation 21%
  2 Scopus citations
• 2001

  Reconciling initiative and discourse structure

  Strayer, S. E. & Heeman, P. A., 2001.

  Research output: Contribution to conference › Paper › peer-review

  • Model structures 100%
  1 Scopus citations
• 2000

  Acknowledgments in human-computer interaction

  Ward, K. & Heeman, P. A., 2000, p. 280-287. 8 p.

  Research output: Contribution to conference › Paper › peer-review

  • Human-Computer Interaction (HCI) 100%
  • spoken language 84%
  • Spoken Language 83%
  • Human computer interaction 78%
  • Human Uses 52%
  4 Scopus citations

• Adaptive transform coding as constrained vector quantization

  Archer, C. & Leen, T. K., 2000, p. 308-317. 10 p.

  Research output: Contribution to conference › Paper › peer-review

  • Vector quantization 100%
  • Principal component analysis 63%
  • Image compression 45%
  • Signal to noise ratio 18%
  • Experiments 7%
  2 Scopus citations
• 1999

  Acoustic determination of sediment concentrations, settling velocities, horizontal transports and vertical fluxes in estuaries

  Jay, D. A., Orton, P., Kay, D. J., Fain, A. & Baptista, A. M., 1999, p. 258-263. 6 p.

  Research output: Contribution to conference › Paper › peer-review

  • estuaries 100%
  • Estuaries 89%
  • Sediments 73%
  • sediments 72%
  • settling 70%
  13 Scopus citations

• Optimal dimension reduction and transform coding with mixture principal components

  Archer, C. & Leen, T. K., 1999, p. 916-920. 5 p.

  Research output: Contribution to conference › Paper › peer-review

  • Principal component analysis 100%
  • Image quality 19%
  • Resource allocation 17%
  6 Scopus citations