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Guanming Wu

Associate Professor

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20032024

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  • Article

    Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

    MC3 Working Group, PCAWG novel somatic mutation calling methods working group & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 4748.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    25 Scopus citations

  • Sex differences in oncogenic mutational processes

    PCAWG Tumour Subtypes and Clinical Translation & PCAWG Consortium, Dec 1 2020, In: Nature communications. 11, 1, 4330.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    52 Scopus citations

  • Systematic MicroRNA Analysis Identifies ATP6V0C as an Essential Host Factor for Human Cytomegalovirus Replication

    Pavelin, J., Reynolds, N., Chiweshe, S., Wu, G., Tiribassi, R. & Grey, F., 2013, In: PLoS pathogens. 9, 12, p. 1-13 13 p., e1003820.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    38 Scopus citations

  • The genome knowledgebase: A resource for biologists and bioinformaticists

    Joshi-Tope, G., Vastrik, I., Gopinath, G. R., Matthews, L., Schmidt, E., Gillespie, M., D'Eustachio, P., Jassal, B., Lewis, S., Wu, G., Birney, E. & Stein, L., 2003, In: Cold Spring Harbor symposia on quantitative biology. 68, p. 237-243 7 p.

    Research output: Contribution to journal › Article › peer-review

    44 Scopus citations

  • The landscape of viral associations in human cancers

    PCAWG Pathogens & PCAWG Consortium, Mar 1 2020, In: Nature genetics. 52, 3, p. 320-330 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    218 Scopus citations

  • The reactome pathway knowledgebase

    Fabregat, A., Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S., Matthews, L., May, B., Milacic, M., Rothfels, K., Shamovsky, V., Webber, M., Weiser, J., Williams, M., Wu, G., Stein, L., & 2 othersHermjakob, H. & D'Eustachio, P., 2016, In: Nucleic acids research. 44, D1, p. D481-D487

    Research output: Contribution to journal › Article › peer-review

    Open Access
    978 Scopus citations

  • The reactome pathway knowledgebase

    Jassal, B., Matthews, L., Viteri, G., Gong, C., Lorente, P., Fabregat, A., Sidiropoulos, K., Cook, J., Gillespie, M., Haw, R., Loney, F., May, B., Milacic, M., Rothfels, K., Sevilla, C., Shamovsky, V., Shorser, S., Varusai, T., Weiser, J., Wu, G., & 3 othersStein, L., Hermjakob, H. & D'Eustachio, P., Jan 1 2020, In: Nucleic acids research. 48, D1, p. D498-D503

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1638 Scopus citations

  • The Reactome pathway knowledgebase

    Croft, D., Mundo, A. F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., Garapati, P., Gillespie, M., Kamdar, M. R., Jassal, B., Jupe, S., Matthews, L., May, B., Palatnik, S., Rothfels, K., Shamovsky, V., Song, H., Williams, M., Birney, E., & 3 othersHermjakob, H., Stein, L. & D'Eustachio, P., Jan 1 2014, In: Nucleic acids research. 42, D1, p. D472-D477

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1234 Scopus citations

  • The Reactome Pathway Knowledgebase

    Fabregat, A., Jupe, S., Matthews, L., Sidiropoulos, K., Gillespie, M., Garapati, P., Haw, R., Jassal, B., Korninger, F., May, B., Milacic, M., Roca, C. D., Rothfels, K., Sevilla, C., Shamovsky, V., Shorser, S., Varusai, T., Viteri, G., Weiser, J., Wu, G., & 3 othersStein, L., Hermjakob, H. & D'Eustachio, P., Jan 1 2018, In: Nucleic acids research. 46, D1, p. D649-D655

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1754 Scopus citations

  • The reactome pathway knowledgebase 2022

    Gillespie, M., Jassal, B., Stephan, R., Milacic, M., Rothfels, K., Senff-Ribeiro, A., Griss, J., Sevilla, C., Matthews, L., Gong, C., Deng, C., Varusai, T., Ragueneau, E., Haider, Y., May, B., Shamovsky, V., Weiser, J., Brunson, T., Sanati, N., Beckman, L., & 15 othersShao, X., Fabregat, A., Sidiropoulos, K., Murillo, J., Viteri, G., Cook, J., Shorser, S., Bader, G., Demir, E., Sander, C., Haw, R., Wu, G., Stein, L., Hermjakob, H. & D'Eustachio, P., Jan 7 2022, In: Nucleic acids research. 50, D1, p. D687-D692

    Research output: Contribution to journal › Article › peer-review

    Open Access
    682 Scopus citations

  • The Reactome Pathway Knowledgebase 2024

    Milacic, M., Beavers, D., Conley, P., Gong, C., Gillespie, M., Griss, J., Haw, R., Jassal, B., Matthews, L., May, B., Petryszak, R., Ragueneau, E., Rothfels, K., Sevilla, C., Shamovsky, V., Stephan, R., Tiwari, K., Varusai, T., Weiser, J., Wright, A., & 4 othersWu, G., Stein, L., Hermjakob, H. & D'Eustachio, P., Jan 5 2024, In: Nucleic acids research. 52, D1, p. D672-D678

    Research output: Contribution to journal › Article › peer-review

    Open Access
    14 Scopus citations

  • Tumor-suppressive activity of lunatic fringe in prostate through differential modulation of notch receptor activation

    Zhang, S., Chung, W. C., Wu, G., Egan, S. E. & Xu, K., Feb 2014, In: Neoplasia (United States). 16, 2, p. 158-167 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    31 Scopus citations

  • Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis

    Voight, B. F., Scott, L. J., Steinthorsdottir, V., Morris, A. P., Dina, C., Welch, R. P., Zeggini, E., Huth, C., Aulchenko, Y. S., Thorleifsson, G., McCulloch, L. J., Ferreira, T., Grallert, H., Amin, N., Wu, G., Willer, C. J., Raychaudhuri, S., McCarroll, S. A., Langenberg, C., Hofmann, O. M., & 138 othersDupuis, J., Qi, L., Segrè, A. V., Van Hoek, M., Navarro, P., Ardlie, K., Balkau, B., Benediktsson, R., Bennett, A. J., Blagieva, R., Boerwinkle, E., Bonnycastle, L. L., Boström, K. B., Bravenboer, B., Bumpstead, S., Burtt, N. P., Charpentier, G., Chines, P. S., Cornelis, M., Couper, D. J., Crawford, G., Doney, A. S. F., Elliott, K. S., Elliott, A. L., Erdos, M. R., Fox, C. S., Franklin, C. S., Ganser, M., Gieger, C., Grarup, N., Green, T., Griffin, S., Groves, C. J., Guiducci, C., Hadjadj, S., Hassanali, N., Herder, C., Isomaa, B., Jackson, A. U., Johnson, P. R. V., Jørgensen, T., Kao, W. H. L., Klopp, N., Kong, A., Kraft, P., Kuusisto, J., Lauritzen, T., Li, M., Lieverse, A., Lindgren, C. M., Lyssenko, V., Marre, M., Meitinger, T., Midthjell, K., Morken, M. A., Narisu, N., Nilsson, P., Owen, K. R., Payne, F., Perry, J. R. B., Petersen, A. K., Platou, C., Proença, C., Prokopenko, I., Rathmann, W., Rayner, N. W., Robertson, N. R., Rocheleau, G., Roden, M., Sampson, M. J., Saxena, R., Shields, B. M., Shrader, P., Sigurdsson, G., Sparsø, T., Strassburger, K., Stringham, H. M., Sun, Q., Swift, A. J., Thorand, B., Tichet, J., Tuomi, T., Van Dam, R. M., Van Haeften, T. W., Van Herpt, T., Van Vliet-Ostaptchouk, J. V., Walters, G. B., Weedon, M. N., Wijmenga, C., Witteman, J., Bergman, R. N., Cauchi, S., Collins, F. S., Gloyn, A. L., Gyllensten, U., Hansen, T., Hide, W. A., Hitman, G. A., Hofman, A., Hunter, D. J., Hveem, K., Laakso, M., Mohlke, K. L., Morris, A. D., Palmer, C. N. A., Pramstaller, P. P., Rudan, I., Sijbrands, E., Stein, L. D., Tuomilehto, J., Uitterlinden, A., Walker, M., Wareham, N. J., Watanabe, R. M., Abecasis, G. R., Boehm, B. O., Campbell, H., Daly, M. J., Hattersley, A. T., Hu, F. B., Meigs, J. B., Pankow, J. S., Pedersen, O., Wichmann, H. E., Barroso, I., Florez, J. C., Frayling, T. M., Groop, L., Sladek, R., Thorsteinsdottir, U., Wilson, J. F., Illig, T., Froguel, P., Van Duijn, C. M., Stefansson, K., Altshuler, D., Boehnke, M. & McCarthy, M. I., Jul 2010, In: Nature genetics. 42, 7, p. 579-589 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1484 Scopus citations

  • Using Reactome to build an autophagy mechanism knowledgebase

    Varusai, T. M., Jupe, S., Sevilla, C., Matthews, L., Gillespie, M., Stein, L., Wu, G., D’Eustachio, P., Metzakopian, E. & Hermjakob, H., 2021, In: Autophagy. 17, 6, p. 1543-1554 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5 Scopus citations

  • Using the Reactome Database

    Rothfels, K., Milacic, M., Matthews, L., Haw, R., Sevilla, C., Gillespie, M., Stephan, R., Gong, C., Ragueneau, E., May, B., Shamovsky, V., Wright, A., Weiser, J., Beavers, D., Conley, P., Tiwari, K., Jassal, B., Griss, J., Senff-Ribeiro, A., Brunson, T., & 5 othersPetryszak, R., Hermjakob, H., D'Eustachio, P., Wu, G. & Stein, L., Apr 2023, In: Current Protocols. 3, 4, e722.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations

  • VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms

    Berke, K., Sun, P., Ong, E., Sanati, N., Huffman, A., Brunson, T., Loney, F., Ostrow, J., Racz, R., Zhao, B., Xiang, Z., Masci, A. M., Zheng, J., Wu, G. & He, Y., Mar 12 2021, In: Frontiers in immunology. 12, 639491.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    6 Scopus citations

  • VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data

    Brunson, T., Sanati, N., Huffman, A., Masci, A. M., Zheng, J., Cooke, M. F., Conley, P., He, Y. & Wu, G., 2023, In: Frontiers in immunology. 14, 1141030.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations

  • VIO: Ontology classification and study of vaccine responses given various experimental and analytical conditions

    Ong, E., Sun, P., Berke, K., Zheng, J., Wu, G. & He, Y., Dec 23 2019, In: BMC bioinformatics. 20, 704.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    9 Scopus citations