Biomedical Engineering

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  • Parameterized novelty detection for environmental sensor monitoring

    Archer, C., Leen, T. K. & Baptista, A., 2004, Advances in Neural Information Processing Systems 16 - Proceedings of the 2003 Conference, NIPS 2003. Neural information processing systems foundation, (Advances in Neural Information Processing Systems).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Optimization-based inference for temporally evolving Boolean networks with applications in biology

    Chang, Y. H., Gray, J. & Tomlin, C., 2011, Proceedings of the 2011 American Control Conference, ACC 2011. p. 4129-4134 6 p. 5991347. (Proceedings of the American Control Conference).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Optimal drug treatment for reducing long-term drug resistance

    Asnaashari, T. G. & Chang, Y. H., 2022, 2022 IEEE 61st Conference on Decision and Control, CDC 2022. Institute of Electrical and Electronics Engineers Inc., p. 3213-3218 6 p. (Proceedings of the IEEE Conference on Decision and Control; vol. 2022-December).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access

  • Optical stimulation of excised murine sciatic nerve using 1.8-μm wavelength laser

    Cargill, R., Baumann, T. & Jacques, S. L., 2008, Optical Interactions with Tissue and Cells XIX. 68540I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6854).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Optical scattering as a contrast mechanism in confocal imaging

    Jacques, S. L., 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. IEEE Computer Society, p. 803 1 p. 4649274. (Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology").

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Optical scattering as a contrast mechanism in confocal imaging

    Jacques, S., 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology". p. 803 1 p. 4649274

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Optical characterization and feasibility study of multifunctional polylactic-co-glycolic acid (PLGA) nanoparticles designed for photo-thermal optical coherence tomography

    Subhash, H. M., Xie, H., Smith, J. W. & McCarty, O., 2011, Optical Coherence Tomography and Coherence Techniques V. 809108. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8091).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Optical characterization and feasibility study of multifunctional polylactic-co-glycolic acid (PLGA) nanoparticles designed for photothermal optical coherence tomography

    Subhash, H. M., Xie, H., Smith, J. W. & McCarty, O., 2011, European Conference on Biomedical Optics, ECBO 2011. Optical Society of America (OSA), 809108. (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • On correlating otoacoustic emissions with blood glucose levels

    Jacobs, P. G., Warr, E. A. & Konrad-Martin, D., 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. IEEE Computer Society, p. 4704-4707 4 p. 4650263. (Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology").

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nonlinear unmixing to account for blood absorption in multispectral imaging for improved quantification of intracellular and extracellular EGFR

    Torres, V. C., Wang, L., Hodge, S., Solanki, A., McMahon, N. P., Gibbs, S. L., Tichauer, K. M. & Samkoe, K. S., 2022, Visualizing and Quantifying Drug Distribution in Tissue VI. Chan, K. F. & Evans, C. L. (eds.). SPIE, 1193805. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11938).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Noninvasive in vivo mapping of intracellular signaling proteins using a pairing of targeted and untargeted fluorescently labeled small molecule kinase inhibitors

    Tichauer, K. M., Wang, L., Solanki, A., Korber, J. R., Gibbs, S. L. & Samkoe, K. S., 2020, Visualizing and Quantifying Drug Distribution in Tissue IV. Chan, K. F. & Evans, C. L. (eds.). SPIE, 112190K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11219).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Neurophysiologically driven image triage: A pilot study

    Mathan, S., Whitlow, S., Erdogmus, D., Pavel, M., Ververs, P. & Dorneich, M., 2006, CHI'06 Extended Abstracts on Human Factors in Computing Systems, CHI EA'06. p. 1085-1090 6 p. (Conference on Human Factors in Computing Systems - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    14 Scopus citations

  • Neural correlates of visual perception in rapid serial visual presentation paradigms

    Huang, Y., Hild, K. E., Pavel, M., Mathan, S. & Erdogmus, D., 2012, 2012 IEEE International Workshop on Machine Learning for Signal Processing - Proceedings of MLSP 2012. 6349766. (IEEE International Workshop on Machine Learning for Signal Processing, MLSP).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Multiplexed immunohistochemistry image analysis using sparse coding

    Chang, Y. H., Tsujikawa, T., Margolin, A., Coussens, L. M. & Gray, J. W., Sep 13 2017, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Smarter Technology for a Healthier World, EMBC 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 4046-4049 4 p. 8037744. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    7 Scopus citations

  • Multimodal confocal mosaics enable high sensitivity and specificity in screening of in situ squamous cell carcinoma

    Grados Luyando, M. D. C., Bar, A., Snavely, N., Jacques, S. & Gareau, D. S., 2014, Multimodal Biomedical Imaging IX. 893704. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8937).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Multimodal confocal mosaicing microscopy: An emphasis on squamous cell carcinoma

    Chen, N. W., Sensibaugh, J., Ardeshiri, A., Blanchard, A., Jacques, S. & Gareau, D., 2010, Photonic Therapeutics and Diagnostics VI. 75480K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7548).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Multi-disciplinary design and in-home evaluation of kinect-based exercise coaching system for elderly

    Kurillo, G., Ofli, F., Marcoe, J., Gorman, P., Jimison, H., Pavel, M. & Bajcsy, R., 2015, Human Aspects of IT for the Aged Population: Design for Everyday Life - 1st International Conference, ITAP 2015 Held as Part of HCI International 2015, Proceedings. Salvendy, G., Zhou, J. & Salvendy, G. (eds.). Springer-Verlag, p. 101-113 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9194).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    6 Scopus citations

  • Monte Carlo simulation study on phase function

    Fu, Y. & Jacques, S. L., 2006, Proceedings of SPIE - The International Society for Optical Engineering. 608408. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6084).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Monte Carlo modeling of pigmented lesions

    Gareau, D., Jacques, S. & Krueger, J., 2014, Photonic Therapeutics and Diagnostics X. SPIE, 89260V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8926).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Monitoring of tissue perfusion during esophagectomies with optical fiber probe spectroscopy

    Gareau, D., Hunter, J. & Jacques, S., 2010, Advanced Biomedical and Clinical Diagnostic Systems VIII. 75551C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7555).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Models of cognitive performance based on home monitoring data

    Jimison, H. B., McKanna, J., Ambert, K., Hagler, S., Hatt, W. J. & Pavel, M., 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10. p. 5234-5237 4 p. 5626277. (2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    19 Scopus citations

  • Modelling cerebral blood oxygenation using monte carlo XYZ-PA

    Zam, A., Jacques, S. L., Alexandrov, S., Li, Y. & Leahy, M. J., 2013, Dynamics and Fluctuations in Biomedical Photonics IX. 858013. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8580).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Modeling tissue optics using Monte Carlo modeling: A tutorial

    Jacques, S. L., 2008, Optical Interactions with Tissue and Cells XIX. 68540T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6854).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    23 Scopus citations

  • Modeling the effect of hemodynamics on cardiac growth during embryonic development

    Rugonyi, S. & Thornburg, K., 2010, Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010. ASME, p. 297-298 2 p. (Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Modeling fluorescent light distributions in scattering media

    Phillips, K. G. & Jacques, S. L., 2010, Optical Interactions with Tissues and Cells XXI. 756207. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7562).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • MobileRF: A robust device-free tracking system based on ahybrid neural network HMM classifier

    Paul, A. S., Wan, E. A., Adenwala, F., Schafermeyer, E., Preiser, N., Kaye, J. & Jacobs, P. G., 2014, UbiComp 2014 - Proceedings of the 2014 ACM International Joint Conference on Pervasive and Ubiquitous Computing. Association for Computing Machinery, Inc, p. 159-170 12 p. (UbiComp 2014 - Proceedings of the 2014 ACM International Joint Conference on Pervasive and Ubiquitous Computing).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    25 Scopus citations

  • Mixed effects models for eeg evoked response detection

    Huang, Y., Erdogmus, D., Pavel, M. & Mathan, S., 2008, Proceedings of the 2008 IEEE Workshop on Machine Learning for Signal Processing, MLSP 2008. p. 91-96 6 p. 4685461. (Proceedings of the 2008 IEEE Workshop on Machine Learning for Signal Processing, MLSP 2008).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    8 Scopus citations

  • Micro-tattoo guided OCT imaging of site specific inflammation

    Phillips, K. G., Choudhury, N., Samatham, R. V., Singh, H. & Jacques, S. L., 2010, Biomedical Applications of Light Scattering IV. 75730S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7573).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Micro-Joule pico-second range Yb 3+-doped fibre laser for medical applications in acupuncture

    Alvarez-Chavez, J. A., Rivera-Manrique, S. I. & Jacques, S. L., 2011, 22nd Congress of the International Commission for Optics: Light for the Development of the World. 801193. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8011).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Measuring tissue optical properties in vivo using reflectance-mode confocal microscopy and OCT

    Jacques, S. L., Samatham, R., Choudhury, N., Fu, Y. & Levitz, D., 2008, Biomedical Applications of Light Scattering II. 68640B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6864).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    17 Scopus citations

  • Measuring in-home walking speed using wall-mounted RF transceiver arrays

    Jacobs, P. G., Wan, E. A., Schafermeyer, E., Adenwala, F., Paul, A. S., Preiser, N. & Kaye, J., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 914-917 4 p. 6943740. (2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    9 Scopus citations

  • Measuring changes in activity patterns during a norovirus epidemic at a retirement community

    Campbell, I. H., Austin, D., Hayes, T. L., Pavel, M., Riley, T., Mattek, N. & Kaye, J., 2011, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. p. 6793-6796 4 p. 6091675. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    12 Scopus citations

  • Mapping tissue optical attenuation to identify cancer using optical coherence tomography

    McLaughlin, R. A., Scolaro, L., Robbins, P., Saunders, C., Jacques, S. L. & Sampson, D. D., 2009, Medical Image Computing and Computer-Assisted Intervention - MICCAI2009 - 12th International Conference, Proceedings. PART 2 ed. p. 657-664 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5762 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    19 Scopus citations

  • Low coherence interferometry of the cochlear partition

    Choudhury, N., Jacques, S. L., Mathew, S., Chen, F., Zheng, J. & Nuttall, A. L., 2005, Auditory Mechanisms: Processes and Models - Proceedings of the 9th International Symposium. Nuttall, A. L., Ren, T., Gillespie, P., Grosh, K. & de Boer, E. (eds.). World Scientific Publishing Co. Pte Ltd, p. 111-112 2 p. (Auditory Mechanisms: Processes and Models - Proceedings of the 9th International Symposium).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Linking visual appearance of skin to the underlying optical properties using multispectral imaging

    Choudhury, N., Samatham, R. & Jacques, S. L., 2010, Photonic Therapeutics and Diagnostics VI. 75480G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7548).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    7 Scopus citations

  • Ligand-conjugated quantum dots for targeted drug delivery to nerve cells

    Vu, T. Q., Maddipati, R., Blute, T. A., Nehilla, B. J., Nusblat, L. & Desai, T. A., 2005, 2005 3rd IEEE/EMBS Special Topic Conference on Microtechnology in Medicine and Biology. p. 152-153 2 p. 1548410. (2005 3rd IEEE/EMBS Special Topic Conference on Microtechnology in Medicine and Biology; vol. 2005).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Ligand bound quantum dots for intracellular imaging of neural receptors

    Vu, T. Q., Rajan, S. S. & Liu, H., 2007, Colloidal Quantum Dots for Biomedical Applications II. 644813. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6448).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Learning invariant features of tumor signatures

    Le, Q. V., Han, J., Gray, J. W., Spellman, P. T., Borowsky, A. & Parvin, B., 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 302-305 4 p. 6235544. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    26 Scopus citations

  • Learning in linear feature-discovery networks

    Leen, T. K., 1991, Proceedings of SPIE - The International Society for Optical Engineering. Haykin, S. (ed.). Publ by Int Soc for Optical Engineering, p. 472-481 10 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1565).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Large-scale image database triage via EEG evoked responses

    Huang, Y., Erdogmus, D., Mathan, S. & Pavel, M., 2008, 2008 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP. p. 429-432 4 p. 4517638. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    19 Scopus citations

  • Iterative function separation for gene regulatory function identification

    Bhushan, P., Chang, Y. H. & Tomlin, C. J., Feb 8 2015, 54rd IEEE Conference on Decision and Control,CDC 2015. Institute of Electrical and Electronics Engineers Inc., p. 133-138 6 p. 7402098. (Proceedings of the IEEE Conference on Decision and Control; vol. 54rd IEEE Conference on Decision and Control,CDC 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • In vivo nerve-specificity of rhodamines and Si-rhodamines

    Montano, A. R., Wang, L. G., Barth, C. W., Shams, N. A., Kumarapeli, K. A. S. U. & Gibbs, S. L., 2020, Molecular-Guided Surgery: Molecules, Devices, and Applications VI. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 112220I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11222).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    3 Scopus citations

  • In vivo measurements of epidermal thickness by reflectance mode confocal microscopy to assess cellular proliferation induced by topical agents

    Phillips, K. G., Samatham, R., Thuillier, P. & Jacques, S. L., 2009, Biomedical Applications of Light Scattering III. 71870S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7187).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • In vivo imaging and vibration measurement of Guinea pig cochlea

    Choudhury, N., Chen, F., Zheng, J., Nuttall, A. L. & Jacques, S. L., 2008, Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine XII. 68471V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6847).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations

  • Investigation of the effect of hydration on dermal collagen in ex vivo human skin tissue using second harmonic generation microscopy

    Samatham, R., Wang, N. K. & Jacques, S. L., 2016, Photonic Therapeutics and Diagnostics XII. Mandelis, A., Choi, B., Wong, B. J. F., Ilgner, J. F., Marcu, L., Skala, M. C., Kollias, N., Zeng, H., Kang, H. W., Tearney, G. J., Gregory, K. W. & Campagnola, P. J. (eds.). SPIE, 96890W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9689).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations

  • Investigation of oxazine and rhodamine derivatives as peripheral nerve tissue targeting contrast agent for in Vivo fluorescence imaging

    Wang, L. G., Barth, C. W., Combs, J. R., Montaño, A. R. & Gibbs, S. L., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    7 Scopus citations

  • Intracellular paired agent imaging enables improved evaluation of tyrosine kinase inhibitor target engagement

    Solanki, A., Wang, L., Korber, J., McMahon, N., Tichauer, K., Samkoe, K. S. & Gibbs, S. L., 2020, Visualizing and Quantifying Drug Distribution in Tissue IV. Chan, K. F. & Evans, C. L. (eds.). SPIE, 112190F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11219).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    5 Scopus citations

  • Integrative analysis on histopathological image for identifying cellular heterogeneity

    Chang, Y. H., Thibault, G., Johnson, B., Margolin, A. & Gray, J. W., 2017, Medical Imaging 2017: Digital Pathology. Gurcan, M. N. & Tomaszewski, J. E. (eds.). SPIE, 101400T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10140).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access

  • Inhomogeneous Monte Carlo simulations of dermoscopic spectroscopy

    Gareau, D. S., Li, T., Jacques, S. & Krueger, J., 2012, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues X. 82251B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8225).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Image-based mapping of cells onto a cell cycle continuum for integration of single cell sequencing and live cell imaging

    Schultz, A., Alahmari, S., Johnson, J., Veith, T., Siddiqui, Z., El Naqa, I., Heiser, L. & Andor, N., 2022, Proceedings - IEEE 8th International Conference on Big Data Computing Service and Applications, BigDataService 2022. Institute of Electrical and Electronics Engineers Inc., p. 119-123 5 p. (Proceedings - IEEE 8th International Conference on Big Data Computing Service and Applications, BigDataService 2022).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution