Research output per year
Research output per year
- 27 results
Search results
-
2023
First demonstration of a novel nerve-targeting fluorophore in a cohort of ex vivo human tissues
Hebert, K. A., Bateman, L., Parker, D., Nunziata, J., Paydarfar, J. A., Hong, J., Kerr, D. A., Zanazzi, G. J., Barth, C. W., Wang, L., Gibbs, S. L. & Henderson, E. R., 2023, Molecular-Guided Surgery: Molecules, Devices, and Applications IX. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 123610D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12361).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access1 Scopus citations -
Proceduralist Criteria for Evaluating Interface Utility of Novel Imaging Modalities in Early Phase Clinical Trials - Evaluating the Need for Standardized Criteria
Henderson, E. R., Elliott, J., Jiang, S., Gitajn, I. L., Lee, J., Gibbs, S., Bouvet, M., Mahadevan-Jansen, A., Daly, M., Streeter, S. S., Paulsen, K. D., Pogue, B. W., Samkoe, K. S. & Singhal, S., 2023, Molecular-Guided Surgery: Molecules, Devices, and Applications IX. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 123610F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12361).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access -
Use of Freshly Amputated Human Limbs for Pre-Clinical Evaluation of Molecular-Targeted Fluorescent Probes
Bateman, L. M., Hebert, K. A., Streeter, S. S., Nunziata, J. A., Barth, C. W., Wang, L. G., Gibbs, S. L. & Henderson, E. R., 2023, Molecular-Guided Surgery: Molecules, Devices, and Applications IX. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 1236109. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12361).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access1 Scopus citations -
2022
An investigation into the in vivo performance of Changsha and rhodamine fluorophores
Montaño, A. R., Wang, L. G., Masillati, A., Shams, N. A. & Gibbs, S. L., 2022, Molecular-Guided Surgery: Molecules, Devices, and Applications VIII. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 119430A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11943).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Arbitrary-Length Analogs to de Bruijn Sequences
Nellore, A. & Ward, R., Jun 1 2022, 33rd Annual Symposium on Combinatorial Pattern Matching, CPM 2022. Bannai, H. & Holub, J. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 9. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 223).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Fine-tuning physicochemical properties of Oxazine-4 for nerve-specific imaging
Greer, W. S., Montaño, A., Shams, N. A., Szafran-Reeder, D., Masillati, A., Wang, L. G. & Gibbs, S. L., 2022, Molecular-Guided Surgery: Molecules, Devices, and Applications VIII. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 1194308. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11943).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Image-based mapping of cells onto a cell cycle continuum for integration of single cell sequencing and live cell imaging
Schultz, A., Alahmari, S., Johnson, J., Veith, T., Siddiqui, Z., El Naqa, I., Heiser, L. & Andor, N., 2022, Proceedings - IEEE 8th International Conference on Big Data Computing Service and Applications, BigDataService 2022. Institute of Electrical and Electronics Engineers Inc., p. 119-123 5 p. (Proceedings - IEEE 8th International Conference on Big Data Computing Service and Applications, BigDataService 2022).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Nonlinear unmixing to account for blood absorption in multispectral imaging for improved quantification of intracellular and extracellular EGFR
Torres, V. C., Wang, L., Hodge, S., Solanki, A., McMahon, N. P., Gibbs, S. L., Tichauer, K. M. & Samkoe, K. S., 2022, Visualizing and Quantifying Drug Distribution in Tissue VI. Chan, K. F. & Evans, C. L. (eds.). SPIE, 1193805. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11938).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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The advantages and disadvantages of novel contrast agent types for fluorescence guided surgery
Barth, C. W. & Gibbs, S. L., 2022, Molecular-Guided Surgery: Molecules, Devices, and Applications VIII. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 1194309. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11943).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2021
A method for validating depth-resolved biodistributions in topically-stained specimen with multi-channel fluorescence cryo-imaging.
Byrd, B. K., Strawbridge, R. S., Wells, W., Barth, C., Gibbs, S. & Davis, S. C., 2021, Molecular-Guided Surgery: Molecules, Devices, and Applications VII. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 116250X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11625).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access -
An invertible transform for efficient string matching in Labeled Digraphs
Nellore, A., Nguyen, A. & Thompson, R. F., Jul 1 2021, 32nd Annual Symposium on Combinatorial Pattern Matching, CPM 2021. Gawrychowski, P. & Starikovskaya, T. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 20. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 191).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
4 Scopus citations -
2020
Fluorescence image-guided surgery: A perspective on contrast agent development
Barth, C. W. & Gibbs, S. L., 2020, Molecular-Guided Surgery: Molecules, Devices, and Applications VI. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 112220J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11222).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access67 Scopus citations -
Intracellular paired agent imaging enables improved evaluation of tyrosine kinase inhibitor target engagement
Solanki, A., Wang, L., Korber, J., McMahon, N., Tichauer, K., Samkoe, K. S. & Gibbs, S. L., 2020, Visualizing and Quantifying Drug Distribution in Tissue IV. Chan, K. F. & Evans, C. L. (eds.). SPIE, 112190F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11219).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
4 Scopus citations -
In vivo nerve-specificity of rhodamines and Si-rhodamines
Montano, A. R., Wang, L. G., Barth, C. W., Shams, N. A., Kumarapeli, K. A. S. U. & Gibbs, S. L., 2020, Molecular-Guided Surgery: Molecules, Devices, and Applications VI. Gioux, S., Gibbs, S. L. & Pogue, B. W. (eds.). SPIE, 112220I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11222).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access3 Scopus citations -
Noninvasive in vivo mapping of intracellular signaling proteins using a pairing of targeted and untargeted fluorescently labeled small molecule kinase inhibitors
Tichauer, K. M., Wang, L., Solanki, A., Korber, J. R., Gibbs, S. L. & Samkoe, K. S., 2020, Visualizing and Quantifying Drug Distribution in Tissue IV. Chan, K. F. & Evans, C. L. (eds.). SPIE, 112190K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11219).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Probing the spatiotemporal dynamics of Ras-associated membrane nanodomains with high-throughput single particle tracking via photoactivated localization microscopy (spt-PALM)
Lee, Y., Tao, K., Phelps, C., Huang, T., Mostofian, B., Zuckerman, D. & Nan, X., 2020, High-Speed Biomedical Imaging and Spectroscopy V. Tsia, K. K. & Goda, K. (eds.). SPIE, 112500N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11250).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Single cell tracking based on Voronoi partition via stable matching
Chang, Y. H., Linsley, J., Lamstein, J., Kalra, J., Epstein, I., Barch, M., Daily, K., Synder, P., Omberg, L., Heiser, L. & Finkbeiner, S., Dec 14 2020, 2020 59th IEEE Conference on Decision and Control, CDC 2020. Institute of Electrical and Electronics Engineers Inc., p. 5086-5091 6 p. 9304436. (Proceedings of the IEEE Conference on Decision and Control; vol. 2020-December).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access1 Scopus citations -
2019
cmIF: A Python Library for Scalable Multiplex Imaging Pipelines
Eng, J., Bucher, E., Gray, E., Campbell, L. G., Thibault, G., Heiser, L., Gibbs, S., Gray, J. W., Chin, K. & Chang, Y. H., 2019, Mathematical and Computational Oncology - 1st International Symposium, ISMCO 2019, Proceedings. Bebis, G., Benos, T., Chen, K., Jahn, K. & Lima, E. (eds.). Springer, p. 37-43 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11826 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
1 Scopus citations -
Diagnostic performance of receptor-specific surgical specimen staining correlate with receptor expression level
House, B. J., Schaefer, J. M., Barth, C. W., Davis, S. C. & Gibbs, S. L., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access1 Scopus citations -
Effect of staining temperature on topical dual stain imaging of tissue specimens for tumor identification
Folaron, M. R., Strawbridge, R. R., Samkoe, K. S., Gibbs, S. L. & Davis, S. C., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620L. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access2 Scopus citations -
Fluorescent nerve identification in resected human tissue specimens
Barth, C. W., Amling, C. L. & Gibbs, S. L., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
2 Scopus citations -
Investigation of oxazine and rhodamine derivatives as peripheral nerve tissue targeting contrast agent for in Vivo fluorescence imaging
Wang, L. G., Barth, C. W., Combs, J. R., Montaño, A. R. & Gibbs, S. L., 2019, Molecular-Guided Surgery: Molecules, Devices, and Applications V. Pogue, B. W. & Gioux, S. (eds.). SPIE, 108620H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10862).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access7 Scopus citations -
Variational autoencoding tissue response to microenvironment perturbation
Schau, G. F., Thibault, G., Dane, M. A., Gray, J. W., Heiser, L. M. & Chang, Y. H., 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109491M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access1 Scopus citations -
2018
Federated Galaxy: Biomedical Computing at the Frontier
Afgan, E., Jalili, V., Goonasekera, N., Taylor, J. & Goecks, J., Sep 7 2018, Proceedings - 2018 IEEE International Conference on Cloud Computing, CLOUD 2018 - Part of the 2018 IEEE World Congress on Services. IEEE Computer Society, p. 871-874 4 p. 8457892. (IEEE International Conference on Cloud Computing, CLOUD; vol. 2018-July).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access8 Scopus citations -
2017
Breast cancer histopathology image analysis pipeline for tumor purity estimation
Azimi, V., Chang, Y. H., Thibault, G., Smith, J., Tsujikawa, T., Kukull, B., Jensen, B., Corless, C., Margolin, A. & Gray, J. W., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 1137-1140 4 p. 7950717. (Proceedings - International Symposium on Biomedical Imaging).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access9 Scopus citations -
Precision medicine and FPGA technology: Challenges and opportunities
Hill, B., Smith, J., Srinivasa, G., Sonmez, K., Sirasao, A., Gupta, A. & Mukherjee, M., Sep 27 2017, 2017 IEEE 60th International Midwest Symposium on Circuits and Systems, MWSCAS 2017. Institute of Electrical and Electronics Engineers Inc., p. 655-658 4 p. 8053008. (Midwest Symposium on Circuits and Systems; vol. 2017-August).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
7 Scopus citations -
2016
Visualizing Oxazine 4 nerve-specific fluorescence ex vivo in frozen tissue sections
Barth, C. W. & Gibbs, S. L., 2016, Molecular-Guided Surgery: Molecules, Devices, and Applications II. Pogue, B. W. & Gioux, S. (eds.). SPIE, 96960R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9696).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access11 Scopus citations